69 commits

Author	SHA1	Message	Date
sneakers-the-rat	087064be48	adjusting array adapters to linkml arrays	2024-07-03 00:41:16 -07:00
sneakers-the-rat	2e40506443	requests caching, python 10	2024-07-02 00:34:01 -07:00
sneakers-the-rat	de30f83edd	import fixtures	2024-07-02 00:01:54 -07:00
sneakers-the-rat	1d6584573a	one last straggler	2024-07-01 23:56:56 -07:00
sneakers-the-rat	7c6e69c87e	ruff unsafe fixes	2024-07-01 23:05:47 -07:00
sneakers-the-rat	3768e3ce0d	enable black preview and automatic linebreaks in long strings	2024-07-01 22:12:16 -07:00
sneakers-the-rat	d4a0c82d00	some ruff fixes	2024-07-01 22:09:49 -07:00
sneakers-the-rat	07aa879bb9	ruff automatic fixes	2024-07-01 21:44:35 -07:00
sneakers-the-rat	79fc7f23ad	black formatting	2024-07-01 21:23:31 -07:00
sneakers-the-rat	1eddf04400	get tests running again	2024-07-01 18:59:21 -07:00
sneakers-the-rat	d522dd84a5	merge from origin	2024-07-01 15:46:23 -07:00
sneakers-the-rat	4296b27538	catchup with prior work	2024-07-01 15:44:26 -07:00
Yaroslav Halchenko	63a405f4aa	[DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos ... === Do not change lines below === { "chain": [], "cmd": "codespell -w || :", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^	2024-04-17 15:59:53 -04:00
Yaroslav Halchenko	190a5de0e3	Use _ for a variable which is not used	2024-04-17 15:55:52 -04:00
sneakers-the-rat	eac5ef4c80	more docs work ... move conftest to root so we find doctests? maybe we don't want to keep that tho	2023-10-19 21:20:50 -07:00
sneakers-the-rat	dd956b35c3	Still working on docs! ... Added ability to index datasets wtih arrays with getitem	2023-10-18 21:18:02 -07:00
sneakers-the-rat	464d95d64d	omfg another one. i'm done	2023-10-12 00:19:40 -07:00
sneakers-the-rat	d2185ee1c3	for pydantic provider test by escaping additional bad chars in numpy field name	2023-10-12 00:02:52 -07:00
sneakers-the-rat	3101797b0d	don't render jinja template as having a literal "keys" attr instead of item ... also remove unnecessary warnings	2023-10-11 23:28:22 -07:00
sneakers-the-rat	fee86135a3	omfg i hate this bug so much if this works i'll be so mad	2023-10-11 22:38:46 -07:00
sneakers-the-rat	92b1a6aac0	holy hell it was a TYPE COERCION in the way linkml handles annotations and a version mismatch between CI and local ... https://github.com/linkml/linkml-model/pull/162	2023-10-11 22:30:26 -07:00
sneakers-the-rat	0d29ed279f	hold up can this really be the bug	2023-10-11 22:21:44 -07:00
sneakers-the-rat	282acc063e	trying to debug on CI by abusing warnings lol	2023-10-11 21:38:29 -07:00
sneakers-the-rat	3a426454c6	trying to debug on CI by abusing warnings lol	2023-10-11 21:31:00 -07:00
sneakers-the-rat	52754112aa	make allow_repo an instance-level setting	2023-10-11 20:55:03 -07:00
sneakers-the-rat	d9d62618bc	Add source namespace to all generated linkml schemas ... change `namespace` annotation to `is_namespace` and use `namespace` for name of namespace dont change commit when commit is None - otherwise always reset to recent version when we don't intend to	2023-10-11 20:03:08 -07:00
sneakers-the-rat	c6ca97e010	Correctly clone fixed versions in tests, adjusted fixed values to match, set default git clone temp dir from config variables	2023-10-11 19:24:08 -07:00
sneakers-the-rat	c4d42cdacf	remove split from schema adapter because it turned out to be a bad idea, we just use tree_root instead	2023-10-11 18:32:31 -07:00
sneakers-the-rat	2d1fe3ad96	read is functional again, calling it a night.	2023-10-10 00:12:33 -07:00
sneakers-the-rat	0508e3b620	re-enable truncate file test	2023-10-09 23:30:39 -07:00
sneakers-the-rat	91875dabb2	re-enable janky hdmf mapping test just to have it on the board for morale ... Fix serializing datasets	2023-10-09 23:27:33 -07:00
sneakers-the-rat	42e64dce75	Refactor dataset adapter to use check/apply style maps! ... General cleaning around maps module, getting ready to remove translate module	2023-10-09 23:06:24 -07:00
sneakers-the-rat	adaf939497	classes adapter	2023-10-09 20:13:42 -07:00
sneakers-the-rat	79397ec398	dict not list	2023-10-09 19:05:08 -07:00
sneakers-the-rat	2b530c4b33	don't require warning when at wrong git version	2023-10-09 19:04:00 -07:00
sneakers-the-rat	a7b0f8880e	fix tests, cant assign to tuple	2023-10-09 18:59:53 -07:00
sneakers-the-rat	6f32a5bfd3	super annoying you have to import all fixtures and dependencies manually	2023-10-09 16:37:07 -07:00
sneakers-the-rat	edf7a4c445	[tests] - test adapter + results	2023-10-09 16:33:02 -07:00
sneakers-the-rat	39c600fda1	Regenerate nwb_schema_language models	2023-10-09 15:06:53 -07:00
sneakers-the-rat	6da6ef281f	nevermind need to still fix model generation	2023-10-05 22:15:33 -07:00
sneakers-the-rat	06311b21bd	[tests] cheap read test	2023-10-05 22:12:27 -07:00
sneakers-the-rat	8405ea948a	[tests] ndarray proxy and serialization	2023-10-05 22:05:10 -07:00
sneakers-the-rat	033f6c434d	[tests] nocover stuff that's just from the source module	2023-10-05 21:39:15 -07:00
sneakers-the-rat	c215e69fd8	[tests] nocover stuff that's just from the source module	2023-10-05 21:35:25 -07:00
sneakers-the-rat	a0d96014e1	[tests] pydantic generator	2023-10-05 21:22:00 -07:00
sneakers-the-rat	808c63e7c2	skip provider test just to get coverage numbers	2023-10-05 18:03:01 -07:00
sneakers-the-rat	d77dec5cc0	decrease deprecation warnings	2023-10-04 22:54:20 -07:00
sneakers-the-rat	5438b2489b	Fix relative imports in ectopic models -- ... Use a MetaPathFinder to allow python to resolve imports from the temporary model directory Build dependent versions in split builds Clear package imports when allow_repo=False	2023-10-04 22:06:26 -07:00
sneakers-the-rat	3b11afded6	fix truncate hdf5 file to not try and write while iterating	2023-10-04 20:19:54 -07:00
sneakers-the-rat	ab63ea071c	removing pandas	2023-10-04 18:02:40 -07:00