Commit graph

125 commits

Author SHA1 Message Date
27b5dddfdd
updating model generation methods, still some models being converted to str instead of being inlined, but almost there 2024-09-04 00:04:21 -07:00
8078492f90
CHECKPOINT WITH IT WORKING before cleanup and model regeneration 2024-09-03 17:48:36 -07:00
d1498a3733
checkpointing working on model loading. it's a sloggggggggg 2024-09-03 00:54:56 -07:00
a6934276d2
codespell 2024-09-02 13:41:41 -07:00
53c415d947
lint 2024-09-02 13:41:04 -07:00
3641d33cc8
split up fixtures and nwb fixture in particular, add --clean pytest option 2024-09-02 13:40:46 -07:00
49585e467a
working on grpah loading of nwb files 2024-08-31 01:47:42 -07:00
b555ccb199
testing nwb file, and experimenting with yaml format 2024-08-30 00:39:10 -07:00
a7a935d508
initial refactor 2024-08-15 23:31:40 -07:00
ec7a8254fe
fix tsrv test 2024-08-15 01:55:15 -07:00
24494b8ee4
reference vector series tests, fix model tests 2024-08-15 01:43:42 -07:00
ce096db349
aligned dynamictable tests 2024-08-15 00:57:44 -07:00
7e7cbc1ac1
fix setattr for index and data 2024-08-14 23:03:03 -07:00
54409c7b28
codespell istg 2024-08-14 22:27:01 -07:00
36add1a306
region tests 2024-08-14 22:17:03 -07:00
7cb8eea6fe
lint 2024-08-14 00:21:48 -07:00
b610f32c4b
vectordata indexing tests 2024-08-14 00:21:06 -07:00
5780947fe6
indexing tests, fix for pytest 8, logging tests 2024-08-14 00:09:24 -07:00
43ff3503dc
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable 2024-08-13 23:38:53 -07:00
01e46f7531
Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns 2024-08-13 21:25:56 -07:00
0a93195726
lint 2024-08-12 22:59:15 -07:00
06a18c23a8
working aligned dynamic table and TimeSeriesReferenceVectorData 2024-08-12 22:57:00 -07:00
0452a4359f
add logging. less janky adapter instantiation using model validators. correctly propagate properties from ancestor classes when building 2024-08-12 18:48:59 -07:00
92d28baedd
coercion for extra columns passed as arrays 2024-08-07 20:23:18 -07:00
cebb21993d
actually fix indexing 2024-08-07 19:22:29 -07:00
362965daf5
correct test for equality for series 2024-08-07 18:56:01 -07:00
9e7c53344d
oop 2024-08-07 02:28:06 -07:00
a9909485a4
my god it works but what have i done 2024-08-07 02:03:04 -07:00
a993ee10f2
continue removing nptyping, actually fix indexing 2024-08-06 21:40:23 -07:00
3ee7c68e15
fix array casting for dtypes that have a shape attr but nothing in it 2024-08-06 20:41:00 -07:00
edea802ff1
remove dask, nptyping 2024-08-06 20:35:23 -07:00
a11d3d042e
working ragged array indexing before rebuilding models 2024-08-06 19:44:04 -07:00
c2e663eca0
fuckin LINT 2024-08-05 21:12:34 -07:00
6431afa7e5
update tests 2024-08-05 21:11:12 -07:00
c06859a537
first impl of dynamictable working! 2024-08-05 20:51:52 -07:00
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups. 2024-08-05 16:05:44 -07:00
38e8a6f7a0
lint 2024-07-31 01:27:45 -07:00
abf1b0e6c0
update hdmf models/schema 2024-07-31 01:17:39 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins 2024-07-31 01:13:31 -07:00
c39d464e89
fix tests - update docstring tests, fix numpydantic import injects 2024-07-29 18:20:30 -07:00
73ae5be91c
lint 2024-07-29 16:28:48 -07:00
04b08f10fc
wtf and a third commit, i gotta figure out what thats about 2024-07-29 16:22:29 -07:00
c98f25f973
Named generic for dynamictableregions, etc. 2024-07-26 19:54:35 -07:00
3d8403e9e3
lint 2024-07-24 22:49:35 -07:00
781b667952
working pydantic provider (at least superficially) 2024-07-24 21:51:55 -07:00
974058ce5f
assorted cleanings but i am tired 2024-07-19 21:28:24 -07:00
2e7670a2bd
yaml peek to quickly find the value of a key 2024-07-19 20:50:18 -07:00
27d18b69d8
continue stripping out old linkml monkeypatching 2024-07-18 01:01:29 -07:00
1920c9f292
continue removing NDArray type, since it's in numpydantic now. 2024-07-10 00:20:01 -07:00
2f59f0a69b
refactor providers into modules 2024-07-09 23:52:58 -07:00