Commit graph

49 commits

Author SHA1 Message Date
a993ee10f2
continue removing nptyping, actually fix indexing 2024-08-06 21:40:23 -07:00
a309c25c3d
regenerate model, lint 2024-08-06 19:57:45 -07:00
a11d3d042e
working ragged array indexing before rebuilding models 2024-08-06 19:44:04 -07:00
83dd59d30d
lint! 2024-08-05 20:59:01 -07:00
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups. 2024-08-05 16:05:44 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins 2024-07-31 01:13:31 -07:00
f955c2acc3
getting spanked by codespell as usual 2024-07-29 16:31:34 -07:00
e0dde2c52f
translation notes 2024-07-29 15:30:51 -07:00
af11bb61ec
fix imports being inside the any_of range, more manual inspection before finishing for the night 2024-07-24 22:47:06 -07:00
781b667952
working pydantic provider (at least superficially) 2024-07-24 21:51:55 -07:00
27d18b69d8
continue stripping out old linkml monkeypatching 2024-07-18 01:01:29 -07:00
d6750f8df1
we don't need blosc tho 2024-07-10 00:09:17 -07:00
efd05724e3
minor todos 2024-07-09 23:15:29 -07:00
ce902476d1
working version of pretty doctests with sybil :) 2024-07-09 00:27:22 -07:00
34c8be3a2c
functional docs build 2024-07-08 21:37:02 -07:00
b9ed7c0026
testing custom directive for doctests 2024-07-08 19:07:21 -07:00
ec81032ae8
handle compound dtype 2024-07-03 20:39:49 -07:00
25536c053e
docs dependencies 2024-07-01 16:35:10 -07:00
9eb4f0dec6
conversion from poetry to pdm 2024-07-01 16:19:13 -07:00
d522dd84a5
merge from origin 2024-07-01 15:46:23 -07:00
4296b27538
catchup with prior work 2024-07-01 15:44:26 -07:00
Yaroslav Halchenko
2e2ecf10c0 [DATALAD RUNCMD] Do interactive fixing of leftover ambigous typos
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w -i 3 -C 2",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 16:00:34 -04:00
Yaroslav Halchenko
63a405f4aa [DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w || :",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 15:59:53 -04:00
eac5ef4c80 more docs work
move conftest to root so we find doctests? maybe we don't want to keep that tho
2023-10-19 21:20:50 -07:00
e331b8756e minimal fix 2023-10-19 03:08:38 -07:00
c4fc342ff2 use poetry kernel and default kernel for rtd? 2023-10-19 03:00:34 -07:00
2276a7b501 docs, but need to sleep, come back in morning 2023-10-19 02:52:15 -07:00
dd956b35c3 Still working on docs!
Added ability to index datasets wtih arrays with getitem
2023-10-18 21:18:02 -07:00
a1d2924fd3 Some headers to outline next sections 2023-10-18 01:15:23 -07:00
af5b947d12 a bunch of docs stuff 2023-10-18 01:01:15 -07:00
adaf939497 classes adapter 2023-10-09 20:13:42 -07:00
39c600fda1 Regenerate nwb_schema_language models 2023-10-09 15:06:53 -07:00
9947edfed2 Removing DataFrame type from imports, leaving as stub 2023-10-04 17:59:10 -07:00
57fa3d34a2 pandas dataframe mimic 2023-09-23 00:08:59 -07:00
40984a6582 figuring out the strategy here...
- added linkml_meta classvar to store additional linkml properties if needed
- injecting path field to metaclass
- sketch of doing a queue-based read
- prune datasets & example allen institute data
2023-09-22 00:31:34 -07:00
b283e8b0bf get correct path for provider 2023-09-15 00:50:16 -07:00
32f81fd409 more toctree limiting? 2023-09-11 22:26:15 -07:00
6ff7e6baab correct docs toctree depth so homepage isn't so hectic 2023-09-11 19:57:29 -07:00
c69cbdfb38 Docstrings and basic tests for providers.
bugfix - remove redundant language elements that cause a recursion error (eg. subtyping "float" with "float")
2023-09-11 19:38:29 -07:00
0b0fb6c67a cute progress bar and also linkml provider works 2023-09-08 16:12:19 -07:00
d15ba8e2e1 fixing docs build 2023-09-07 19:58:38 -07:00
0cc1dbd862 fixing docs build 2023-09-07 19:53:12 -07:00
42ac8e6d7b fixing docs build 2023-09-07 19:48:58 -07:00
75b710c3eb docs! 2023-09-07 19:32:17 -07:00
78d2ec59d7 - Able to complete build all the way through to importing generated classes 2023-09-04 21:46:17 -07:00
a4806543ef recursion works, more formal build method in adapters 2023-08-23 19:56:09 -07:00
3996f319e2 some vague sketching on mapping namespaces 2023-08-20 23:00:58 -07:00
e8adb4f88c first draft linkml schema 2023-08-16 23:47:35 -07:00
cee4f3146b moving notes to own folder 2023-08-15 02:25:21 -07:00