Commit graph

45 commits

Author SHA1 Message Date
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups. 2024-08-05 16:05:44 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins 2024-07-31 01:13:31 -07:00
f955c2acc3
getting spanked by codespell as usual 2024-07-29 16:31:34 -07:00
e0dde2c52f
translation notes 2024-07-29 15:30:51 -07:00
af11bb61ec
fix imports being inside the any_of range, more manual inspection before finishing for the night 2024-07-24 22:47:06 -07:00
781b667952
working pydantic provider (at least superficially) 2024-07-24 21:51:55 -07:00
27d18b69d8
continue stripping out old linkml monkeypatching 2024-07-18 01:01:29 -07:00
d6750f8df1
we don't need blosc tho 2024-07-10 00:09:17 -07:00
efd05724e3
minor todos 2024-07-09 23:15:29 -07:00
ce902476d1
working version of pretty doctests with sybil :) 2024-07-09 00:27:22 -07:00
34c8be3a2c
functional docs build 2024-07-08 21:37:02 -07:00
b9ed7c0026
testing custom directive for doctests 2024-07-08 19:07:21 -07:00
ec81032ae8
handle compound dtype 2024-07-03 20:39:49 -07:00
25536c053e
docs dependencies 2024-07-01 16:35:10 -07:00
9eb4f0dec6
conversion from poetry to pdm 2024-07-01 16:19:13 -07:00
d522dd84a5
merge from origin 2024-07-01 15:46:23 -07:00
4296b27538
catchup with prior work 2024-07-01 15:44:26 -07:00
Yaroslav Halchenko
2e2ecf10c0 [DATALAD RUNCMD] Do interactive fixing of leftover ambigous typos
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w -i 3 -C 2",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 16:00:34 -04:00
Yaroslav Halchenko
63a405f4aa [DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w || :",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 15:59:53 -04:00
eac5ef4c80 more docs work
move conftest to root so we find doctests? maybe we don't want to keep that tho
2023-10-19 21:20:50 -07:00
e331b8756e minimal fix 2023-10-19 03:08:38 -07:00
c4fc342ff2 use poetry kernel and default kernel for rtd? 2023-10-19 03:00:34 -07:00
2276a7b501 docs, but need to sleep, come back in morning 2023-10-19 02:52:15 -07:00
dd956b35c3 Still working on docs!
Added ability to index datasets wtih arrays with getitem
2023-10-18 21:18:02 -07:00
a1d2924fd3 Some headers to outline next sections 2023-10-18 01:15:23 -07:00
af5b947d12 a bunch of docs stuff 2023-10-18 01:01:15 -07:00
adaf939497 classes adapter 2023-10-09 20:13:42 -07:00
39c600fda1 Regenerate nwb_schema_language models 2023-10-09 15:06:53 -07:00
9947edfed2 Removing DataFrame type from imports, leaving as stub 2023-10-04 17:59:10 -07:00
57fa3d34a2 pandas dataframe mimic 2023-09-23 00:08:59 -07:00
40984a6582 figuring out the strategy here...
- added linkml_meta classvar to store additional linkml properties if needed
- injecting path field to metaclass
- sketch of doing a queue-based read
- prune datasets & example allen institute data
2023-09-22 00:31:34 -07:00
b283e8b0bf get correct path for provider 2023-09-15 00:50:16 -07:00
32f81fd409 more toctree limiting? 2023-09-11 22:26:15 -07:00
6ff7e6baab correct docs toctree depth so homepage isn't so hectic 2023-09-11 19:57:29 -07:00
c69cbdfb38 Docstrings and basic tests for providers.
bugfix - remove redundant language elements that cause a recursion error (eg. subtyping "float" with "float")
2023-09-11 19:38:29 -07:00
0b0fb6c67a cute progress bar and also linkml provider works 2023-09-08 16:12:19 -07:00
d15ba8e2e1 fixing docs build 2023-09-07 19:58:38 -07:00
0cc1dbd862 fixing docs build 2023-09-07 19:53:12 -07:00
42ac8e6d7b fixing docs build 2023-09-07 19:48:58 -07:00
75b710c3eb docs! 2023-09-07 19:32:17 -07:00
78d2ec59d7 - Able to complete build all the way through to importing generated classes 2023-09-04 21:46:17 -07:00
a4806543ef recursion works, more formal build method in adapters 2023-08-23 19:56:09 -07:00
3996f319e2 some vague sketching on mapping namespaces 2023-08-20 23:00:58 -07:00
e8adb4f88c first draft linkml schema 2023-08-16 23:47:35 -07:00
cee4f3146b moving notes to own folder 2023-08-15 02:25:21 -07:00