07aa879bb9
ruff automatic fixes
2024-07-01 21:44:35 -07:00
79fc7f23ad
black formatting
2024-07-01 21:23:31 -07:00
1eddf04400
get tests running again
2024-07-01 18:59:21 -07:00
4296b27538
catchup with prior work
2024-07-01 15:44:26 -07:00
92b1a6aac0
holy hell it was a TYPE COERCION in the way linkml handles annotations and a version mismatch between CI and local
...
https://github.com/linkml/linkml-model/pull/162
2023-10-11 22:30:26 -07:00
c6ca97e010
Correctly clone fixed versions in tests, adjusted fixed values to match, set default git clone temp dir from config variables
2023-10-11 19:24:08 -07:00
c4d42cdacf
remove split from schema adapter because it turned out to be a bad idea, we just use tree_root instead
2023-10-11 18:32:31 -07:00
2d1fe3ad96
read is functional again, calling it a night.
2023-10-10 00:12:33 -07:00
0508e3b620
re-enable truncate file test
2023-10-09 23:30:39 -07:00
6da6ef281f
nevermind need to still fix model generation
2023-10-05 22:15:33 -07:00
06311b21bd
[tests] cheap read test
2023-10-05 22:12:27 -07:00
3b11afded6
fix truncate hdf5 file to not try and write while iterating
2023-10-04 20:19:54 -07:00
f672b931e5
Correctly handle container classes, use dicts instead of lists to be able to index by name. overriding __getitem__ and __getattr__ later
2023-09-26 20:50:11 -07:00
50e816bad4
Working on finalizing the mapping operation... doing it single threaded for now and it's very slow but it completes up until the stage where we need to zip up the orphaned objects and other things that can be inferred from the model.
...
Need to make a proxytable model like proxyarray because reading all these tables takes way too fuckin long and it's not what we want to do anyway.
2023-09-25 22:03:53 -07:00
aac0c7abdd
need 2 stop for the night but its sort of happening
2023-09-22 02:48:40 -07:00
40984a6582
figuring out the strategy here...
...
- added linkml_meta classvar to store additional linkml properties if needed
- injecting path field to metaclass
- sketch of doing a queue-based read
- prune datasets & example allen institute data
2023-09-22 00:31:34 -07:00
e6a41415f5
successfully building many versions of nwb schema.
...
working on hdf5 importing, come back to it when fresh, just sorta poking at it because it's so close.
2023-09-14 02:45:01 -07:00
095d0bc6a9
fixing tests by using temp directory and changing random prior commit hash from nwb core schema
2023-09-11 19:55:45 -07:00
2e87fa0556
working generation from provider
2023-09-08 19:46:42 -07:00
0b0fb6c67a
cute progress bar and also linkml provider works
2023-09-08 16:12:19 -07:00
2b828082e0
perf enhancements to pydantic generation
2023-09-06 22:48:47 -07:00
6a9d612b41
i'm just sorta making a mess here. coming back tomorrow
2023-09-06 00:50:49 -07:00
da2eaea51e
some baseline tests, fixing imports, coverage reports
2023-09-05 21:47:41 -07:00
