mirror of
https://github.com/p2p-ld/nwb-linkml.git
synced 2024-11-14 02:34:28 +00:00
33 lines
No EOL
1.4 KiB
Markdown
33 lines
No EOL
1.4 KiB
Markdown
# TODO
|
|
|
|
## v0.2 - update to linkml-arrays and formal release
|
|
|
|
NWB schema translation
|
|
- handle `links` field in groups
|
|
- handle compound `dtype` like in ophys.PlaneSegmentation.pixel_mask
|
|
- handle compound `dtype` like in TimeSeriesReferenceVectorData
|
|
- Create a validator that checks if all the lists in a compound dtype dataset are same length
|
|
|
|
Cleanup
|
|
- [ ] Update pydantic generator
|
|
- [ ] Make a minimal pydanticgen-only package to slim linkml deps?
|
|
- [ ] Disambiguate "maps" terminology - split out simple maps from the eg. dataset mapping classes
|
|
|
|
Important things that are not implemented yet!
|
|
|
|
- [x] {meth}`nwb_linkml.adapters.classes.ClassAdapter.handle_dtype` does not yet handle compound dtypes,
|
|
leaving them as `AnyType` instead. This is fine for a first draft since they are used rarely within
|
|
NWB, but we will need to handle them by making slots for each of the dtypes since they typically
|
|
represent table-like data.
|
|
- [ ] Need to handle DynamicTables!
|
|
- Adding columns?
|
|
- Validating eg. all are same length?
|
|
- Or do we want to just say "no dynamictables, just subclass and add more slots since it's super easy to do that."
|
|
- method to return a dataframe
|
|
- append rows/this should just be a df basically.
|
|
- [ ] Handle indirect indexing eg. https://pynwb.readthedocs.io/en/stable/tutorials/general/plot_timeintervals.html#accessing-referenced-timeseries
|
|
|
|
## Docs TODOs
|
|
|
|
```{todolist}
|
|
``` |