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229 commits

Author SHA1 Message Date
df15d666cf
cleanup 2024-10-18 20:19:22 -07:00
2ea861c9a0
python 3.9 compat 2024-10-18 20:15:15 -07:00
22f6023d35
steps towards parallel-friendly tests, but not quite there yet. 2024-10-18 20:11:58 -07:00
6ce3d58528
working roundtrip serialization from extra after correcting serialization schema. doh. 2024-10-18 19:31:22 -07:00
33eb1c15d5
stuck at the recursion error in pydantic core 2024-10-18 00:30:33 -07:00
1701ef9d7e
get tests working again 2024-10-17 22:15:30 -07:00
fcd8b652ea
clean up dead code 2024-10-17 22:06:46 -07:00
421b2e2b01
docs 2024-10-17 22:02:12 -07:00
1afe359681
messy ass checkpoint before i come back and clean it up 2024-10-17 22:01:39 -07:00
1f7955d6ef
scratch work on serializing from a proxy 2024-10-17 22:01:39 -07:00
0d0b310b6e
checkpointing 2024-10-17 22:01:37 -07:00
66ab444ec2
Merge pull request #31 from p2p-ld/tests-combinatorics
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[tests] `numpydantic.testing` - exposing helpers for 3rd-party interface development & combinatoric testing
2024-10-11 02:30:38 -07:00
8f60c60e8a
bump version, changelog 2024-10-11 02:29:38 -07:00
189a3e7919
some docs 2024-10-11 02:23:34 -07:00
b0a63af95a
tests for testing helpers 2024-10-11 00:48:02 -07:00
5268884050
use the validated array instance in testing numpy dump to array, not the array we would generate 2024-10-11 00:19:59 -07:00
09a5f51f8d
bump action versions 2024-10-11 00:13:29 -07:00
84cecfb09f
ut oh left a pdb in 2024-10-11 00:10:45 -07:00
e87f24f9c3
windows can't do <U as a path even hypothetically 2024-10-11 00:09:39 -07:00
d9f785efdd
windows can't do <U as a path even hypothetically 2024-10-11 00:09:27 -07:00
2991d360e1
unbound local error in stringifying type 2024-10-11 00:02:16 -07:00
1187b37b2d
hoo boy. working combinatoric testing.
Split out annotation dtype and shape, swap out all interface tests, fix numpy and dask model casting, make merging models more efficient, correctly parameterize and mark tests!
2024-10-10 23:56:45 -07:00
5d4f03a8a9
finish replacing interface tests with new helper system 2024-10-10 18:58:05 -07:00
3356738e42
refactoring array generation, swapping in the interface case generators 2024-10-04 00:46:49 -07:00
e701bf6e9b
interface cases 2024-10-03 23:18:18 -07:00
ad060ce40d
python 3.9 compat 2024-10-03 20:02:34 -07:00
7dbb22f828
format and also add pdm scripts 2024-10-03 20:01:56 -07:00
8f1eb6e5b4
linting for tests 2024-10-03 19:57:54 -07:00
f291afbbe2
create testing module, add to docs 2024-10-03 19:33:40 -07:00
124024f48a
split fixtures into folder 2024-10-03 18:51:34 -07:00
69dbe39557
Merge pull request #28 from p2p-ld/hdf5-3_12
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close hdf5 files, use hdfpy 3.12
2024-09-26 20:12:15 -07:00
c5a323d35d
bump version, update changelog 2024-09-26 20:11:03 -07:00
8f7d48fc56
close hdf5 files, use hdfpy 3.12 2024-09-26 19:58:27 -07:00
99e07925e6
updates to readme
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2024-09-25 18:15:27 -07:00
b7f7140ec8
Merge pull request #26 from p2p-ld/tests-linkml
[tests] Test against linkml numpydantic generator
2024-09-25 17:46:21 -07:00
b6c72b9e47
bump version, update changelog 2024-09-25 17:38:00 -07:00
4ad3dc0696
unbreak numpydantic 2024-09-25 17:30:26 -07:00
5b59e9fc07
purposely break numpydantic to check for linkml test failure 2024-09-25 17:26:55 -07:00
c13daaf915
omg 2024-09-25 17:24:52 -07:00
b19a11df8a
auto-yes pip uninstall 2024-09-25 17:23:45 -07:00
945cd9b77e
just force uninstall and reinstall like we do with linkml-runtime 2024-09-25 17:21:59 -07:00
8b22b2152e
editable install so path will be informative 2024-09-25 17:19:19 -07:00
960d4f70a1
windows compat - use anchor not root 2024-09-25 17:14:13 -07:00
ea2d1238ed
python 3.9 compat 2024-09-25 17:11:02 -07:00
1f9e3ea481
only pin h5py version on non-mac platforms, since mac seems to be unaffected by file locking problem. fix windows permission error 2024-09-25 17:06:03 -07:00
fe2dbdcd58
indexerror finding filesystem root 2024-09-25 16:58:50 -07:00
5a7e2e2389
fix skipping relativize absolute paths that are first-level root directories 2024-09-25 16:54:42 -07:00
a5925f992e
pin lower h5py version, relock, add statement on python and version support 2024-09-25 16:28:53 -07:00
4d41ebfade
disable fail-fast to test all options even if one fails 2024-09-25 15:01:27 -07:00
eb96ae17f1
ugh lint 2024-09-25 14:55:03 -07:00