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docs dependencies
2024-07-01 23:35:10 +00:00
# This file is @generated by PDM.
# It is not intended for manual editing.
[metadata]
first impl of dynamictable working!
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groups = ["default", "dev", "plot", "tests"]
strategy = ["inherit_metadata"]
lock_version = "4.5.0"
working on grpah loading of nwb files
2024-08-31 08:47:42 +00:00
content_hash = "sha256:1c297e11f6dc9e4f6b8d29df872177d2ce65bbd334c0b65aa5175dfb125c4d9f"
first impl of dynamictable working!
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[[metadata.targets]]
requires_python = ">=3.10,<3.13"
docs dependencies
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[[package]]
name = "annotated-types"
version = "0.7.0"
requires_python = ">=3.8"
summary = "Reusable constraint types to use with typing.Annotated"
first impl of dynamictable working!
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groups = ["default"]
dependencies = [
"typing-extensions>=4.0.0; python_version < \"3.9\"",
]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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[[package]]
name = "antlr4-python3-runtime"
version = "4.9.3"
summary = "ANTLR 4.9.3 runtime for Python 3.7"
first impl of dynamictable working!
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groups = ["default"]
dependencies = [
"typing; python_version < \"3.5\"",
]
docs dependencies
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files = [
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]
[[package]]
name = "arrow"
version = "1.3.0"
requires_python = ">=3.8"
summary = "Better dates & times for Python"
first impl of dynamictable working!
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groups = ["default"]
docs dependencies
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dependencies = [
"python-dateutil>=2.7.0",
"types-python-dateutil>=2.8.10",
]
files = [
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[[package]]
name = "attrs"
remove dask, nptyping
2024-08-07 03:35:23 +00:00
version = "24.2.0"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.7"
summary = "Classes Without Boilerplate"
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["default", "dev", "tests"]
first impl of dynamictable working!
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dependencies = [
"importlib-metadata; python_version < \"3.8\"",
]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
remove dask, nptyping
2024-08-07 03:35:23 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
]
add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
name = "black"
first impl of dynamictable working!
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version = "24.8.0"
add formatting config
2024-07-02 04:22:35 +00:00
requires_python = ">=3.8"
summary = "The uncompromising code formatter."
indexing tests, fix for pytest 8, logging tests
2024-08-14 07:09:24 +00:00
groups = ["default"]
add formatting config
2024-07-02 04:22:35 +00:00
dependencies = [
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"pathspec>=0.9.0",
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"typing-extensions>=4.0.1; python_version < \"3.11\"",
]
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
name = "blinker"
version = "1.8.2"
requires_python = ">=3.8"
summary = "Fast, simple object-to-object and broadcast signaling"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
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requests caching, python 10
2024-07-02 07:34:01 +00:00
[[package]]
name = "cattrs"
version = "23.2.3"
requires_python = ">=3.8"
summary = "Composable complex class support for attrs and dataclasses."
groups = ["dev", "tests"]
dependencies = [
"attrs>=23.1.0",
"exceptiongroup>=1.1.1; python_version < \"3.11\"",
"typing-extensions!=4.6.3,>=4.1.0; python_version < \"3.11\"",
]
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "certifi"
update branch for linkml
2024-07-18 07:39:56 +00:00
version = "2024.7.4"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.6"
summary = "Python package for providing Mozilla's CA Bundle."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
update branch for linkml
2024-07-18 07:39:56 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
]
[[package]]
name = "cfgraph"
version = "0.2.1"
summary = "rdflib collections flattening graph"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"rdflib>=0.4.2",
]
files = [
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[[package]]
name = "chardet"
version = "5.2.0"
requires_python = ">=3.7"
summary = "Universal encoding detector for Python 3"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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[[package]]
name = "charset-normalizer"
version = "3.3.2"
requires_python = ">=3.7.0"
summary = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
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indexing tests, fix for pytest 8, logging tests
2024-08-14 07:09:24 +00:00
groups = ["default", "plot"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
version = "7.6.1"
requires_python = ">=3.8"
add formatting config
2024-07-02 04:22:35 +00:00
summary = "Code coverage measurement for Python"
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["dev", "tests"]
add formatting config
2024-07-02 04:22:35 +00:00
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
version = "7.6.1"
add formatting config
2024-07-02 04:22:35 +00:00
extras = ["toml"]
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
requires_python = ">=3.8"
add formatting config
2024-07-02 04:22:35 +00:00
summary = "Code coverage measurement for Python"
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["dev", "tests"]
add formatting config
2024-07-02 04:22:35 +00:00
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
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add formatting config
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
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add formatting config
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docs dependencies
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[[package]]
name = "curies"
update branch for linkml
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version = "0.7.10"
docs dependencies
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requires_python = ">=3.8"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
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"requests",
]
files = [
update branch for linkml
2024-07-18 07:39:56 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
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groups = ["plot"]
we do need black as a runtime dep
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[[package]]
name = "dash-core-components"
version = "2.0.0"
summary = "Core component suite for Dash"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
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]
[[package]]
name = "dash-cytoscape"
version = "0.3.0"
summary = "A Component Library for Dash aimed at facilitating network visualization in Python, wrapped around Cytoscape.js"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
dependencies = [
"dash",
]
files = [
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[[package]]
name = "dash-html-components"
version = "2.0.0"
summary = "Vanilla HTML components for Dash"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
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[[package]]
name = "dash-table"
version = "5.0.0"
summary = "Dash table"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "deprecated"
version = "1.2.14"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
summary = "Python @deprecated decorator to deprecate old python classes, functions or methods."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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[[package]]
name = "et-xmlfile"
version = "1.1.0"
requires_python = ">=3.6"
summary = "An implementation of lxml.xmlfile for the standard library"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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[[package]]
name = "exceptiongroup"
update branch for linkml
2024-07-18 07:39:56 +00:00
version = "1.2.2"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.7"
summary = "Backport of PEP 654 (exception groups)"
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
marker = "python_version < \"3.11\""
files = [
update branch for linkml
2024-07-18 07:39:56 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
name = "flask"
version = "3.0.3"
requires_python = ">=3.8"
summary = "A simple framework for building complex web applications."
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
dependencies = [
"Jinja2>=3.1.2",
"Werkzeug>=3.0.0",
"blinker>=1.6.2",
"click>=8.1.3",
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
"importlib-metadata>=3.6.0; python_version < \"3.10\"",
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
"itsdangerous>=2.1.2",
]
files = [
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "fqdn"
version = "1.5.1"
requires_python = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
summary = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
dependencies = [
"cached-property>=1.3.0; python_version < \"3.8\"",
]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
name = "future-fstrings"
version = "1.2.0"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
summary = "A backport of fstrings to python<3.6"
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["dev", "tests"]
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
dependencies = [
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]
add formatting config
2024-07-02 04:22:35 +00:00
files = [
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "graphviz"
version = "0.20.3"
requires_python = ">=3.8"
summary = "Simple Python interface for Graphviz"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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[[package]]
name = "greenlet"
version = "3.0.3"
requires_python = ">=3.7"
summary = "Lightweight in-process concurrent programming"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
lint and lock
2024-08-16 06:34:14 +00:00
marker = "(platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\") and python_version < \"3.13\""
docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "h5py"
version = "3.11.0"
requires_python = ">=3.8"
summary = "Read and write HDF5 files from Python"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"numpy>=1.17.3",
]
files = [
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[[package]]
name = "hbreader"
version = "0.9.1"
requires_python = ">=3.7"
summary = "Honey Badger reader - a generic file/url/string open and read tool"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
[[package]]
name = "hdmf"
version = "3.14.3"
requires_python = ">=3.8"
summary = "A hierarchical data modeling framework for modern science data standards"
groups = ["dev", "tests"]
dependencies = [
"h5py>=2.10",
"importlib-resources; python_version < \"3.9\"",
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"pandas>=1.0.5",
"ruamel-yaml>=0.16",
"scipy>=1.4",
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files = [
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "idna"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "3.8"
requires_python = ">=3.6"
docs dependencies
2024-07-01 23:35:10 +00:00
summary = "Internationalized Domain Names in Applications (IDNA)"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
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copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
"zipp>=0.5",
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copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
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requests caching, python 10
2024-07-02 07:34:01 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
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we do need black as a runtime dep
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docs dependencies
2024-07-01 23:35:10 +00:00
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
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groups = ["default", "plot"]
docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
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first impl of dynamictable working!
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docs dependencies
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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name = "jsonschema"
update branch for linkml
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docs dependencies
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requires_python = ">=3.8"
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testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
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first impl of dynamictable working!
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docs dependencies
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first impl of dynamictable working!
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docs dependencies
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update branch for linkml
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2024-07-01 23:35:10 +00:00
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testing nwb file, and experimenting with yaml format
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groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
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name = "jsonschema"
update branch for linkml
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docs dependencies
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extras = ["format"]
requires_python = ">=3.8"
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first impl of dynamictable working!
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groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
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update branch for linkml
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"jsonschema==4.23.0",
docs dependencies
2024-07-01 23:35:10 +00:00
"rfc3339-validator",
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2024-07-01 23:35:10 +00:00
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[[package]]
name = "linkml"
handle compound dtype
2024-07-04 03:39:49 +00:00
version = "0.0.0"
update numpydantic version and relock
2024-07-31 09:07:44 +00:00
requires_python = "<4.0.0,>=3.8.1"
handle compound dtype
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git = "https://github.com/sneakers-the-rat/linkml"
update branch for linkml
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ref = "nwb-linkml"
copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
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update numpydantic version and relock
2024-07-31 09:07:44 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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update numpydantic version and relock
2024-07-31 09:07:44 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
"jsonschema[format]>=4.0.0",
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copy and overwrite rather than shutil.move in generate
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"linkml-runtime<2.0.0,>=1.8.1",
docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
"watchdog>=0.9.0",
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[[package]]
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version = "0.1.0"
requires_python = ">=3.7"
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = "<4.0,>=3.8"
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
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first impl of dynamictable working!
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docs dependencies
2024-07-01 23:35:10 +00:00
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "mdurl"
version = "0.1.2"
requires_python = ">=3.7"
summary = "Markdown URL utilities"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
name = "mypy-extensions"
version = "1.0.0"
requires_python = ">=3.5"
summary = "Type system extensions for programs checked with the mypy type checker."
indexing tests, fix for pytest 8, logging tests
2024-08-14 07:09:24 +00:00
groups = ["default"]
add formatting config
2024-07-02 04:22:35 +00:00
files = [
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
name = "nest-asyncio"
version = "1.6.0"
requires_python = ">=3.5"
summary = "Patch asyncio to allow nested event loops"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
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add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
name = "networkx"
version = "3.3"
requires_python = ">=3.10"
summary = "Python package for creating and manipulating graphs and networks"
working on grpah loading of nwb files
2024-08-31 08:47:42 +00:00
groups = ["default", "dev", "tests"]
add formatting config
2024-07-02 04:22:35 +00:00
files = [
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "numpy"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
version = "1.26.4"
requires_python = ">=3.9"
docs dependencies
2024-07-01 23:35:10 +00:00
summary = "Fundamental package for array computing in Python"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
]
handle compound dtype
2024-07-04 03:39:49 +00:00
[[package]]
name = "numpydantic"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
version = "1.3.3"
handle compound dtype
2024-07-04 03:39:49 +00:00
requires_python = "<4.0,>=3.9"
summary = "Type and shape validation and serialization for numpy arrays in pydantic models"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
handle compound dtype
2024-07-04 03:39:49 +00:00
dependencies = [
"numpy>=1.24.0",
"pydantic>=2.3.0",
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
"typing-extensions>=4.11.0; python_version < \"3.11\"",
handle compound dtype
2024-07-04 03:39:49 +00:00
]
files = [
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
{file = "numpydantic-1.3.3-py3-none-any.whl", hash = "sha256:e002767252b1b77abb7715834ab7cbf58964baddae44863710f09e71b23287e4"},
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handle compound dtype
2024-07-04 03:39:49 +00:00
]
lint and lock
2024-08-16 06:34:14 +00:00
[[package]]
name = "nwb-models"
version = "0.1.0"
requires_python = ">=3.10"
summary = "Pydantic/LinkML models for Neurodata Without Borders"
groups = ["default"]
dependencies = [
"numpydantic>=1.3.3",
"pandas>=2.2.2",
"pydantic>=2.3.0",
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files = [
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{file = "nwb_models-0.1.0.tar.gz", hash = "sha256:3c3ccfc6c2ac03dffe26ba7f180aecc650d6593c05d4f306f84b90fabc3ff2b8"},
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "nwb-schema-language"
version = "0.1.3"
requires_python = ">=3.9,<4.0"
summary = "Translation of the nwb-schema-language to LinkML"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"linkml-runtime<2.0.0,>=1.1.24",
"pydantic<3.0.0,>=2.3.0",
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files = [
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]
[[package]]
name = "openpyxl"
version = "3.1.5"
requires_python = ">=3.8"
summary = "A Python library to read/write Excel 2010 xlsx/xlsm files"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"et-xmlfile",
]
files = [
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{file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"},
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[[package]]
name = "packaging"
version = "24.1"
requires_python = ">=3.8"
summary = "Core utilities for Python packages"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
{file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
{file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
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add pandas
2024-07-31 08:30:06 +00:00
[[package]]
name = "pandas"
version = "2.2.2"
requires_python = ">=3.9"
summary = "Powerful data structures for data analysis, time series, and statistics"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
add pandas
2024-07-31 08:30:06 +00:00
dependencies = [
"numpy>=1.22.4; python_version < \"3.11\"",
"numpy>=1.23.2; python_version == \"3.11\"",
"numpy>=1.26.0; python_version >= \"3.12\"",
"python-dateutil>=2.8.2",
"pytz>=2020.1",
"tzdata>=2022.7",
]
files = [
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
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indexing tests, fix for pytest 8, logging tests
2024-08-14 07:09:24 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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working pydantic provider (at least superficially)
2024-07-25 04:51:55 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
requires_python = ">=3.8"
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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2024-07-25 04:51:55 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
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requests caching, python 10
2024-07-02 07:34:01 +00:00
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2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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assorted cleanings but i am tired
2024-07-20 04:28:24 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = "<4.0,>=3.8"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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assorted cleanings but i am tired
2024-07-20 04:28:24 +00:00
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2024-07-01 23:35:10 +00:00
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update branch for linkml
2024-07-18 07:39:56 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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update branch for linkml
2024-07-18 07:39:56 +00:00
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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2024-07-18 07:39:56 +00:00
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2024-07-01 23:35:10 +00:00
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update branch for linkml
2024-07-18 07:39:56 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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2024-07-18 07:39:56 +00:00
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2024-08-30 07:39:10 +00:00
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2024-07-01 23:35:10 +00:00
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2024-08-28 03:49:53 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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2024-07-01 23:35:10 +00:00
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2024-08-30 07:39:10 +00:00
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2024-07-31 08:30:06 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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[[package]]
name = "referencing"
version = "0.35.1"
requires_python = ">=3.8"
summary = "JSON Referencing + Python"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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name = "requests"
version = "2.32.3"
requires_python = ">=3.8"
summary = "Python HTTP for Humans."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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requests caching, python 10
2024-07-02 07:34:01 +00:00
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requires_python = ">=3.8"
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groups = ["dev", "tests"]
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
dependencies = [
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "rfc3339-validator"
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requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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version = "1.3.8"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
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name = "rich"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "13.8.0"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.7.0"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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files = [
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "rpds-py"
remove dask, nptyping
2024-08-07 03:35:23 +00:00
version = "0.20.0"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
summary = "Python bindings to Rust's persistent data structures (rpds)"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
remove dask, nptyping
2024-08-07 03:35:23 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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version = "0.18.6"
requires_python = ">=3.7"
summary = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
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version = "0.2.8"
requires_python = ">=3.6"
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testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
lint and lock
2024-08-16 06:34:14 +00:00
marker = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""
docs dependencies
2024-07-01 23:35:10 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
name = "ruff"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "0.6.2"
add formatting config
2024-07-02 04:22:35 +00:00
requires_python = ">=3.7"
summary = "An extremely fast Python linter and code formatter, written in Rust."
groups = ["dev"]
files = [
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
]
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
[[package]]
name = "scipy"
version = "1.14.1"
requires_python = ">=3.10"
summary = "Fundamental algorithms for scientific computing in Python"
groups = ["dev", "tests"]
dependencies = [
"numpy<2.3,>=1.23.5",
]
files = [
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]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
name = "setuptools"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "74.0.0"
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
requires_python = ">=3.8"
summary = "Easily download, build, install, upgrade, and uninstall Python packages"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
{file = "setuptools-74.0.0-py3-none-any.whl", hash = "sha256:0274581a0037b638b9fc1c6883cc71c0210865aaa76073f7882376b641b84e8f"},
{file = "setuptools-74.0.0.tar.gz", hash = "sha256:a85e96b8be2b906f3e3e789adec6a9323abf79758ecfa3065bd740d81158b11e"},
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
]
docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "shexjsg"
version = "0.8.2"
summary = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"pyjsg>=0.11.10",
]
files = [
{file = "ShExJSG-0.8.2-py2.py3-none-any.whl", hash = "sha256:3b0d8432dd313bee9e1343382c5e02e9908dd941a7dd7342bf8c0200fe523766"},
{file = "ShExJSG-0.8.2.tar.gz", hash = "sha256:f17a629fc577fa344382bdee143cd9ff86588537f9f811f66cea6f63cdbcd0b6"},
]
[[package]]
name = "six"
version = "1.16.0"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
summary = "Python 2 and 3 compatibility utilities"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
{file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
{file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
]
[[package]]
name = "sortedcontainers"
version = "2.4.0"
summary = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
{file = "sortedcontainers-2.4.0-py2.py3-none-any.whl", hash = "sha256:a163dcaede0f1c021485e957a39245190e74249897e2ae4b2aa38595db237ee0"},
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]
[[package]]
name = "sparqlslurper"
version = "0.5.1"
requires_python = ">=3.7.4"
summary = "SPARQL Slurper for rdflib"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"rdflib-shim",
"rdflib>=5.0.0",
"sparqlwrapper>=1.8.2",
]
files = [
{file = "sparqlslurper-0.5.1-py3-none-any.whl", hash = "sha256:ae49b2d8ce3dd38df7a40465b228ad5d33fb7e11b3f248d195f9cadfc9cfff87"},
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]
[[package]]
name = "sparqlwrapper"
version = "2.0.0"
requires_python = ">=3.7"
summary = "SPARQL Endpoint interface to Python"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"rdflib>=6.1.1",
]
files = [
{file = "SPARQLWrapper-2.0.0-py3-none-any.whl", hash = "sha256:c99a7204fff676ee28e6acef327dc1ff8451c6f7217dcd8d49e8872f324a8a20"},
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]
[[package]]
name = "sqlalchemy"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
version = "2.0.32"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.7"
summary = "Database Abstraction Library"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"greenlet!=0.4.17; (platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\") and python_version < \"3.13\"",
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
"importlib-metadata; python_version < \"3.8\"",
docs dependencies
2024-07-01 23:35:10 +00:00
"typing-extensions>=4.6.0",
]
files = [
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
[[package]]
name = "sybil"
indexing tests, fix for pytest 8, logging tests
2024-08-14 07:09:24 +00:00
version = "6.1.1"
add formatting config
2024-07-02 04:22:35 +00:00
requires_python = ">=3.7"
summary = "Automated testing for the examples in your code and documentation."
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["dev", "tests"]
add formatting config
2024-07-02 04:22:35 +00:00
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2024-08-14 07:09:24 +00:00
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add formatting config
2024-07-02 04:22:35 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
name = "tenacity"
update numpydantic version and relock
2024-07-31 09:07:44 +00:00
version = "9.0.0"
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
requires_python = ">=3.8"
summary = "Retry code until it succeeds"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
files = [
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2024-07-31 09:07:44 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "tomli"
version = "2.0.1"
requires_python = ">=3.7"
summary = "A lil' TOML parser"
requests caching, python 10
2024-07-02 07:34:01 +00:00
groups = ["default", "dev", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
marker = "python_version < \"3.11\""
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[[package]]
name = "tqdm"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
version = "4.66.5"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.7"
summary = "Fast, Extensible Progress Meter"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
dependencies = [
"colorama; platform_system == \"Windows\"",
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "types-python-dateutil"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "2.9.0.20240821"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
summary = "Typing stubs for python-dateutil"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
files = [
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "typing-extensions"
version = "4.12.2"
requires_python = ">=3.8"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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add pandas
2024-07-31 08:30:06 +00:00
[[package]]
name = "tzdata"
version = "2024.1"
requires_python = ">=2"
summary = "Provider of IANA time zone data"
testing nwb file, and experimenting with yaml format
2024-08-30 07:39:10 +00:00
groups = ["default", "dev", "tests"]
add pandas
2024-07-31 08:30:06 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "uri-template"
version = "1.3.0"
requires_python = ">=3.7"
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first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
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requests caching, python 10
2024-07-02 07:34:01 +00:00
[[package]]
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
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version = "2.2.2"
requires_python = ">=3.8"
summary = "HTTP library with thread-safe connection pooling, file post, and more."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default", "dev", "plot", "tests"]
docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "watchdog"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "5.0.0"
requires_python = ">=3.9"
docs dependencies
2024-07-01 23:35:10 +00:00
summary = "Filesystem events monitoring"
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
copy and overwrite rather than shutil.move in generate
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docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "webcolors"
working aligned dynamic table and TimeSeriesReferenceVectorData
2024-08-13 05:57:00 +00:00
version = "24.8.0"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
summary = "A library for working with the color formats defined by HTML and CSS."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
working aligned dynamic table and TimeSeriesReferenceVectorData
2024-08-13 05:57:00 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
[[package]]
name = "werkzeug"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "3.0.4"
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
requires_python = ">=3.8"
summary = "The comprehensive WSGI web application library."
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
dependencies = [
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files = [
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
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we do need black as a runtime dep
2024-07-10 07:05:41 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
[[package]]
name = "wrapt"
version = "1.16.0"
requires_python = ">=3.6"
summary = "Module for decorators, wrappers and monkey patching."
first impl of dynamictable working!
2024-08-06 03:51:52 +00:00
groups = ["default"]
docs dependencies
2024-07-01 23:35:10 +00:00
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[[package]]
name = "zipp"
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
version = "3.20.1"
docs dependencies
2024-07-01 23:35:10 +00:00
requires_python = ">=3.8"
summary = "Backport of pathlib-compatible object wrapper for zip files"
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
2024-08-14 06:38:53 +00:00
groups = ["plot"]
docs dependencies
2024-07-01 23:35:10 +00:00
files = [
copy and overwrite rather than shutil.move in generate
2024-08-28 03:49:53 +00:00
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docs dependencies
2024-07-01 23:35:10 +00:00
]
Reference in a new issue Copy permalink