911a3ddb61
cast to value in container classes
2024-09-25 21:18:09 -07:00
91b2abf07e
working thru tests for nwb file
2024-09-11 21:04:41 -07:00
a7a935d508
initial refactor
2024-08-15 23:31:40 -07:00
54c18e333e
initial draft of aligned dynamic table before testing and refining. switch pandas import to module-level
2024-08-08 00:31:41 -07:00
a993ee10f2
continue removing nptyping, actually fix indexing
2024-08-06 21:40:23 -07:00
a309c25c3d
regenerate model, lint
2024-08-06 19:57:45 -07:00
a11d3d042e
working ragged array indexing before rebuilding models
2024-08-06 19:44:04 -07:00
83dd59d30d
lint!
2024-08-05 20:59:01 -07:00
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups.
2024-08-05 16:05:44 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins
2024-07-31 01:13:31 -07:00
f955c2acc3
getting spanked by codespell as usual
2024-07-29 16:31:34 -07:00
e0dde2c52f
translation notes
2024-07-29 15:30:51 -07:00
af11bb61ec
fix imports being inside the any_of range, more manual inspection before finishing for the night
2024-07-24 22:47:06 -07:00
781b667952
working pydantic provider (at least superficially)
2024-07-24 21:51:55 -07:00
27d18b69d8
continue stripping out old linkml monkeypatching
2024-07-18 01:01:29 -07:00
d6750f8df1
we don't need blosc tho
2024-07-10 00:09:17 -07:00
efd05724e3
minor todos
2024-07-09 23:15:29 -07:00
ce902476d1
working version of pretty doctests with sybil :)
2024-07-09 00:27:22 -07:00
34c8be3a2c
functional docs build
2024-07-08 21:37:02 -07:00
b9ed7c0026
testing custom directive for doctests
2024-07-08 19:07:21 -07:00
ec81032ae8
handle compound dtype
2024-07-03 20:39:49 -07:00
25536c053e
docs dependencies
2024-07-01 16:35:10 -07:00
9eb4f0dec6
conversion from poetry to pdm
2024-07-01 16:19:13 -07:00
d522dd84a5
merge from origin
2024-07-01 15:46:23 -07:00
4296b27538
catchup with prior work
2024-07-01 15:44:26 -07:00
Yaroslav Halchenko
2e2ecf10c0
[DATALAD RUNCMD] Do interactive fixing of leftover ambigous typos
...
=== Do not change lines below ===
{
"chain": [],
"cmd": "codespell -w -i 3 -C 2",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 16:00:34 -04:00
Yaroslav Halchenko
63a405f4aa
[DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos
...
=== Do not change lines below ===
{
"chain": [],
"cmd": "codespell -w || :",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 15:59:53 -04:00
eac5ef4c80
more docs work
...
move conftest to root so we find doctests? maybe we don't want to keep that tho
2023-10-19 21:20:50 -07:00
e331b8756e
minimal fix
2023-10-19 03:08:38 -07:00
c4fc342ff2
use poetry kernel and default kernel for rtd?
2023-10-19 03:00:34 -07:00
2276a7b501
docs, but need to sleep, come back in morning
2023-10-19 02:52:15 -07:00
dd956b35c3
Still working on docs!
...
Added ability to index datasets wtih arrays with getitem
2023-10-18 21:18:02 -07:00
a1d2924fd3
Some headers to outline next sections
2023-10-18 01:15:23 -07:00
af5b947d12
a bunch of docs stuff
2023-10-18 01:01:15 -07:00
adaf939497
classes adapter
2023-10-09 20:13:42 -07:00
39c600fda1
Regenerate nwb_schema_language models
2023-10-09 15:06:53 -07:00
9947edfed2
Removing DataFrame type from imports, leaving as stub
2023-10-04 17:59:10 -07:00
57fa3d34a2
pandas dataframe mimic
2023-09-23 00:08:59 -07:00
40984a6582
figuring out the strategy here...
...
- added linkml_meta classvar to store additional linkml properties if needed
- injecting path field to metaclass
- sketch of doing a queue-based read
- prune datasets & example allen institute data
2023-09-22 00:31:34 -07:00
b283e8b0bf
get correct path for provider
2023-09-15 00:50:16 -07:00
32f81fd409
more toctree limiting?
2023-09-11 22:26:15 -07:00
6ff7e6baab
correct docs toctree depth so homepage isn't so hectic
2023-09-11 19:57:29 -07:00
c69cbdfb38
Docstrings and basic tests for providers.
...
bugfix - remove redundant language elements that cause a recursion error (eg. subtyping "float" with "float")
2023-09-11 19:38:29 -07:00
0b0fb6c67a
cute progress bar and also linkml provider works
2023-09-08 16:12:19 -07:00
d15ba8e2e1
fixing docs build
2023-09-07 19:58:38 -07:00
0cc1dbd862
fixing docs build
2023-09-07 19:53:12 -07:00
42ac8e6d7b
fixing docs build
2023-09-07 19:48:58 -07:00
75b710c3eb
docs!
2023-09-07 19:32:17 -07:00
78d2ec59d7
- Able to complete build all the way through to importing generated classes
2023-09-04 21:46:17 -07:00
a4806543ef
recursion works, more formal build method in adapters
2023-08-23 19:56:09 -07:00