273 commits

Author	SHA1	Message	Date
sneakers-the-rat	cad57554fd	get ting there, working rolldown of extra attributes, but something still funny in patchclampseries children w.r.t. losing attributes in data	2024-09-13 23:05:34 -07:00
sneakers-the-rat	749703e077	partially functioning rolldown, but getting some wonky results - missing attributes in nested inheritance, and the models are now extremely noisy, creating the same fields over and over even when they aren't overridden or modified by the child class. Need to redo the rolldown, make it less generic, don't dump to dicts, merge in a more targeted way.	2024-09-13 02:42:01 -07:00
sneakers-the-rat	880352d9a4	v0.2.0 of nwb_schema_language - parentization	2024-09-12 22:40:14 -07:00
sneakers-the-rat	0eeea4c517	lint	2024-09-11 21:17:46 -07:00
sneakers-the-rat	95fbce1c4a	add id to index name on aligneddynamictable correctly	2024-09-11 21:16:37 -07:00
sneakers-the-rat	91b2abf07e	working thru tests for nwb file	2024-09-11 21:04:41 -07:00
sneakers-the-rat	bb59c9d465	remove unused code, nocover some debug arms	2024-09-11 19:30:04 -07:00
sneakers-the-rat	d31ac29294	clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references	2024-09-11 19:02:15 -07:00
sneakers-the-rat	1f1325e4aa	bump version of dependant nwb-models	2024-09-11 16:11:55 -07:00
sneakers-the-rat	dfcb395295	regenerate models	2024-09-11 15:50:09 -07:00
sneakers-the-rat	000ddde000	Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit)	2024-09-11 15:44:57 -07:00
sneakers-the-rat	27b5dddfdd	updating model generation methods, still some models being converted to str instead of being inlined, but almost there	2024-09-04 00:04:21 -07:00
sneakers-the-rat	8078492f90	CHECKPOINT WITH IT WORKING before cleanup and model regeneration	2024-09-03 17:48:36 -07:00
sneakers-the-rat	d1498a3733	checkpointing working on model loading. it's a sloggggggggg	2024-09-03 00:54:56 -07:00
sneakers-the-rat	676d42d4f5	instantiate ValidationError according to https://github.com/pydantic/pydantic/issues/6734	2024-09-02 19:00:15 -07:00
sneakers-the-rat	ee35e5921b	exclude metadata vars from column and category checks	2024-09-02 18:50:48 -07:00
sneakers-the-rat	97135c14f2	update models to correctly handle ElementIdentifiers	2024-09-02 18:46:02 -07:00
sneakers-the-rat	a6934276d2	codespell	2024-09-02 13:41:41 -07:00
sneakers-the-rat	53c415d947	lint	2024-09-02 13:41:04 -07:00
sneakers-the-rat	3641d33cc8	split up fixtures and nwb fixture in particular, add --clean pytest option	2024-09-02 13:40:46 -07:00
sneakers-the-rat	49585e467a	working on grpah loading of nwb files	2024-08-31 01:47:42 -07:00
sneakers-the-rat	b555ccb199	testing nwb file, and experimenting with yaml format	2024-08-30 00:39:10 -07:00
sneakers-the-rat	fac18ab147	copy and overwrite rather than shutil.move in generate	2024-08-27 20:49:53 -07:00
sneakers-the-rat	798b92de6b	name change in imports from schema -> is_schema	2024-08-20 23:21:40 -07:00
sneakers-the-rat	cc334ae195	lint	2024-08-20 23:12:01 -07:00
sneakers-the-rat	582ac5f09c	parallel builds, remove monkeypatches	2024-08-20 22:45:24 -07:00
sneakers-the-rat	0c51f00596	aha fix black formatting include, generate core by cloning into tmp directory	2024-08-20 20:26:00 -07:00
sneakers-the-rat	bb3512723f	oh right moved schemas too	2024-08-15 23:38:09 -07:00
sneakers-the-rat	8375fe1e11	lint and lock	2024-08-15 23:34:14 -07:00
sneakers-the-rat	a7a935d508	initial refactor	2024-08-15 23:31:40 -07:00
sneakers-the-rat	ec7a8254fe	fix tsrv test	2024-08-15 01:55:15 -07:00
sneakers-the-rat	3cda6c3e7c	lint	2024-08-15 01:48:34 -07:00
sneakers-the-rat	f5a4173494	update models	2024-08-15 01:47:55 -07:00
sneakers-the-rat	24494b8ee4	reference vector series tests, fix model tests	2024-08-15 01:43:42 -07:00
sneakers-the-rat	10965743eb	regenerate models	2024-08-15 01:01:47 -07:00
sneakers-the-rat	ce096db349	aligned dynamictable tests	2024-08-15 00:57:44 -07:00
sneakers-the-rat	7e7cbc1ac1	fix setattr for index and data	2024-08-14 23:03:03 -07:00
sneakers-the-rat	54409c7b28	codespell istg	2024-08-14 22:27:01 -07:00
sneakers-the-rat	b601027ef6	lint	2024-08-14 22:26:29 -07:00
sneakers-the-rat	36add1a306	region tests	2024-08-14 22:17:03 -07:00
sneakers-the-rat	7cb8eea6fe	lint	2024-08-14 00:21:48 -07:00
sneakers-the-rat	b610f32c4b	vectordata indexing tests	2024-08-14 00:21:06 -07:00
sneakers-the-rat	5780947fe6	indexing tests, fix for pytest 8, logging tests	2024-08-14 00:09:24 -07:00
sneakers-the-rat	d61d1ecf22	regenerate models	2024-08-13 23:39:11 -07:00
sneakers-the-rat	43ff3503dc	more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable	2024-08-13 23:38:53 -07:00
sneakers-the-rat	980db25b15	regenerate models	2024-08-13 21:26:50 -07:00
sneakers-the-rat	01e46f7531	Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns	2024-08-13 21:25:56 -07:00
sneakers-the-rat	50005d33e5	fuckin codespell. ... also don't double run tests	2024-08-13 19:11:46 -07:00
sneakers-the-rat	1715043c01	lint	2024-08-13 19:09:43 -07:00
sneakers-the-rat	9bd36340d7	eager resolution of hdmf namespace when loaded from yaml	2024-08-13 19:08:36 -07:00