55 commits

Author	SHA1	Message	Date
sneakers-the-rat	49585e467a	working on grpah loading of nwb files	2024-08-31 01:47:42 -07:00
sneakers-the-rat	b555ccb199	testing nwb file, and experimenting with yaml format	2024-08-30 00:39:10 -07:00
sneakers-the-rat	fac18ab147	copy and overwrite rather than shutil.move in generate	2024-08-27 20:49:53 -07:00
sneakers-the-rat	582ac5f09c	parallel builds, remove monkeypatches	2024-08-20 22:45:24 -07:00
sneakers-the-rat	a7a935d508	initial refactor	2024-08-15 23:31:40 -07:00
sneakers-the-rat	5780947fe6	indexing tests, fix for pytest 8, logging tests	2024-08-14 00:09:24 -07:00
sneakers-the-rat	43ff3503dc	more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable	2024-08-13 23:38:53 -07:00
sneakers-the-rat	01e46f7531	Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns	2024-08-13 21:25:56 -07:00
sneakers-the-rat	06a18c23a8	working aligned dynamic table and TimeSeriesReferenceVectorData	2024-08-12 22:57:00 -07:00
sneakers-the-rat	0452a4359f	add logging. less janky adapter instantiation using model validators. correctly propagate properties from ancestor classes when building	2024-08-12 18:48:59 -07:00
sneakers-the-rat	edea802ff1	remove dask, nptyping	2024-08-06 20:35:23 -07:00
sneakers-the-rat	c06859a537	first impl of dynamictable working!	2024-08-05 20:51:52 -07:00
sneakers-the-rat	b2d7b12a78	update numpydantic version and relock	2024-07-31 02:07:44 -07:00
sneakers-the-rat	776078ae67	add pandas	2024-07-31 01:30:06 -07:00
sneakers-the-rat	781b667952	working pydantic provider (at least superficially)	2024-07-24 21:51:55 -07:00
sneakers-the-rat	ec843a508b	update branch for linkml	2024-07-18 00:39:56 -07:00
sneakers-the-rat	d6750f8df1	we don't need blosc tho	2024-07-10 00:09:17 -07:00
sneakers-the-rat	878c51e069	we do need black as a runtime dep	2024-07-10 00:05:41 -07:00
sneakers-the-rat	ce902476d1	working version of pretty doctests with sybil :)	2024-07-09 00:27:22 -07:00
sneakers-the-rat	ec81032ae8	handle compound dtype	2024-07-03 20:39:49 -07:00
sneakers-the-rat	01cfb54a5a	working pydantic generator	2024-07-03 01:34:24 -07:00
sneakers-the-rat	2e40506443	requests caching, python 10	2024-07-02 00:34:01 -07:00
sneakers-the-rat	1de70a1aae	python 3.10 compat & update lockfiles	2024-07-02 00:10:28 -07:00
sneakers-the-rat	3e5e73d186	add formatting config	2024-07-01 21:22:35 -07:00
sneakers-the-rat	a0f0b06d66	bump version	2024-07-01 19:01:15 -07:00
sneakers-the-rat	9eb4f0dec6	conversion from poetry to pdm	2024-07-01 16:19:13 -07:00
sneakers-the-rat	eac5ef4c80	more docs work ... move conftest to root so we find doctests? maybe we don't want to keep that tho	2023-10-19 21:20:50 -07:00
sneakers-the-rat	92b1a6aac0	holy hell it was a TYPE COERCION in the way linkml handles annotations and a version mismatch between CI and local ... https://github.com/linkml/linkml-model/pull/162	2023-10-11 22:30:26 -07:00
sneakers-the-rat	3a426454c6	trying to debug on CI by abusing warnings lol	2023-10-11 21:31:00 -07:00
sneakers-the-rat	615b006e4a	updating nwb_schema_language to have proper single/multi fields for author/contact	2023-10-10 01:08:25 -07:00
sneakers-the-rat	729da40dfd	install hdf5	2023-10-09 23:40:31 -07:00
sneakers-the-rat	a7b0f8880e	fix tests, cant assign to tuple	2023-10-09 18:59:53 -07:00
sneakers-the-rat	6f32a5bfd3	super annoying you have to import all fixtures and dependencies manually	2023-10-09 16:37:07 -07:00
sneakers-the-rat	edf7a4c445	[tests] - test adapter + results	2023-10-09 16:33:02 -07:00
sneakers-the-rat	39c600fda1	Regenerate nwb_schema_language models	2023-10-09 15:06:53 -07:00
sneakers-the-rat	75f39b4914	huh coverage got disabled somehow	2023-10-05 18:10:04 -07:00
sneakers-the-rat	3b11afded6	fix truncate hdf5 file to not try and write while iterating	2023-10-04 20:19:54 -07:00
sneakers-the-rat	d16b4757e1	Use dask instead of trying to make a dataframe ... compress arrays when serializing to json	2023-09-26 19:50:49 -07:00
sneakers-the-rat	57fa3d34a2	pandas dataframe mimic	2023-09-23 00:08:59 -07:00
sneakers-the-rat	40984a6582	figuring out the strategy here... ... - added linkml_meta classvar to store additional linkml properties if needed - injecting path field to metaclass - sketch of doing a queue-based read - prune datasets & example allen institute data	2023-09-22 00:31:34 -07:00
sneakers-the-rat	3e2e6915cf	Add ability to make JSON schema with numpy arrays!	2023-09-14 23:43:00 -07:00
sneakers-the-rat	0b0fb6c67a	cute progress bar and also linkml provider works	2023-09-08 16:12:19 -07:00
sneakers-the-rat	a01bb49b1e	working on providers to cache generated models	2023-09-07 18:50:50 -07:00
sneakers-the-rat	2b828082e0	perf enhancements to pydantic generation	2023-09-06 22:48:47 -07:00
sneakers-the-rat	456a5315d2	abandoning github action build	2023-09-05 22:42:46 -07:00
sneakers-the-rat	ce5cd18212	move to .coveragerc	2023-09-05 22:37:41 -07:00
sneakers-the-rat	2e1130c3f6	passing test directory???	2023-09-05 22:29:48 -07:00
sneakers-the-rat	fcd4f70442	explicit configuration passing	2023-09-05 22:21:30 -07:00
sneakers-the-rat	3d69213afe	optional?	2023-09-05 22:13:43 -07:00
sneakers-the-rat	3cb5e74ab8	upload to pypi	2023-09-05 22:10:10 -07:00