Commit graph

227 commits

Author SHA1 Message Date
01e46f7531
Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns 2024-08-13 21:25:56 -07:00
50005d33e5
fuckin codespell.
also don't double run tests
2024-08-13 19:11:46 -07:00
1715043c01
lint 2024-08-13 19:09:43 -07:00
9bd36340d7
eager resolution of hdmf namespace when loaded from yaml 2024-08-13 19:08:36 -07:00
0a93195726
lint 2024-08-12 22:59:15 -07:00
6c07b87ba0
regenerate models 2024-08-12 22:57:32 -07:00
06a18c23a8
working aligned dynamic table and TimeSeriesReferenceVectorData 2024-08-12 22:57:00 -07:00
dd99ac24eb
regenerate models 2024-08-12 19:25:48 -07:00
994b79e0f2
actually no that's stupid, linkml handles inheritance except for the one special case of compound dtypes which aren't a thing in linkml and are here used exclusively for 1d vectors. 2024-08-12 19:25:12 -07:00
0452a4359f
add logging. less janky adapter instantiation using model validators. correctly propagate properties from ancestor classes when building 2024-08-12 18:48:59 -07:00
c09b633cda
lint 2024-08-08 00:32:24 -07:00
54c18e333e
initial draft of aligned dynamic table before testing and refining. switch pandas import to module-level 2024-08-08 00:31:41 -07:00
92d28baedd
coercion for extra columns passed as arrays 2024-08-07 20:23:18 -07:00
cebb21993d
actually fix indexing 2024-08-07 19:22:29 -07:00
362965daf5
correct test for equality for series 2024-08-07 18:56:01 -07:00
9e7c53344d
oop 2024-08-07 02:28:06 -07:00
a9909485a4
my god it works but what have i done 2024-08-07 02:03:04 -07:00
a993ee10f2
continue removing nptyping, actually fix indexing 2024-08-06 21:40:23 -07:00
3ee7c68e15
fix array casting for dtypes that have a shape attr but nothing in it 2024-08-06 20:41:00 -07:00
edea802ff1
remove dask, nptyping 2024-08-06 20:35:23 -07:00
a309c25c3d
regenerate model, lint 2024-08-06 19:57:45 -07:00
a11d3d042e
working ragged array indexing before rebuilding models 2024-08-06 19:44:04 -07:00
c2e663eca0
fuckin LINT 2024-08-05 21:12:34 -07:00
6431afa7e5
update tests 2024-08-05 21:11:12 -07:00
83dd59d30d
lint! 2024-08-05 20:59:01 -07:00
51ceb14309
regenerate models 2024-08-05 20:56:08 -07:00
c06859a537
first impl of dynamictable working! 2024-08-05 20:51:52 -07:00
e5d1cc52de
regenerate models 2024-08-05 18:41:53 -07:00
da6d0d8608
correctly handle attributes 2024-08-05 18:41:38 -07:00
652ddb3b48
update hdmf common table 2024-08-05 17:09:58 -07:00
374bd8971d
fix name array -> value in hdmf mixins 2024-08-05 17:06:59 -07:00
0a150d6bc2
update models 2024-08-05 16:06:05 -07:00
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups. 2024-08-05 16:05:44 -07:00
e72c860edd
update models with shorter names 2024-08-05 14:19:03 -07:00
9bfee3548e
make names less lengthy by only contatenating one layer of nesting with __ 2024-08-05 14:09:50 -07:00
b2d7b12a78
update numpydantic version and relock 2024-07-31 02:07:44 -07:00
2fef717a62
fix attr access in linkml provider result 2024-07-31 01:58:31 -07:00
0d10ba9d75
regenerate models, lint 2024-07-31 01:56:48 -07:00
1d527d8f71
fix hdmf forwardrefs, remove numpy types temporarily 2024-07-31 01:54:14 -07:00
776078ae67
add pandas 2024-07-31 01:30:06 -07:00
38e8a6f7a0
lint 2024-07-31 01:27:45 -07:00
abf1b0e6c0
update hdmf models/schema 2024-07-31 01:17:39 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins 2024-07-31 01:13:31 -07:00
c39d464e89
fix tests - update docstring tests, fix numpydantic import injects 2024-07-29 18:20:30 -07:00
f08216a43f
update models 2024-07-29 18:19:34 -07:00
19e49cf68d
regenerate models after fixing classvar mutation in numpydantic linkml branch 2024-07-29 17:34:28 -07:00
2f0af1ef3c
linting continues 2024-07-29 16:30:53 -07:00
73ae5be91c
lint 2024-07-29 16:28:48 -07:00
04b08f10fc
wtf and a third commit, i gotta figure out what thats about 2024-07-29 16:22:29 -07:00
011902d2cb
update models round 2 for how pycharm always misses half the files for some reason... 2024-07-29 16:18:23 -07:00