141 commits

Author	SHA1	Message	Date
sneakers-the-rat	4672f54630	fix generics with defaults, use typing_extensions	2024-10-03 00:11:38 -07:00
sneakers-the-rat	198ed3bcea	test named slot, add skeletons for basemodel methods	2024-09-30 23:14:50 -07:00
sneakers-the-rat	016b81a5c5	lint	2024-09-30 22:53:55 -07:00
sneakers-the-rat	dfeac9e808	remove outdated generator tests, unskip module	2024-09-30 22:51:56 -07:00
sneakers-the-rat	2ce136709b	minor tidying	2024-09-30 21:47:02 -07:00
sneakers-the-rat	f9f1d49fca	working complete, strict validating io :)	2024-09-26 01:02:16 -07:00
sneakers-the-rat	fc6f60ad61	fix hdmf inheritance during testing, error handling	2024-09-25 20:41:53 -07:00
sneakers-the-rat	8993014832	make the tests pass again - add validator to do the opposite of coerce_value, try to pass the input as the `value` field of the model. fix test assumptions and model creation. ... model update to follow	2024-09-19 22:43:29 -07:00
sneakers-the-rat	749703e077	partially functioning rolldown, but getting some wonky results - missing attributes in nested inheritance, and the models are now extremely noisy, creating the same fields over and over even when they aren't overridden or modified by the child class. Need to redo the rolldown, make it less generic, don't dump to dicts, merge in a more targeted way.	2024-09-13 02:42:01 -07:00
sneakers-the-rat	880352d9a4	v0.2.0 of nwb_schema_language - parentization	2024-09-12 22:40:14 -07:00
sneakers-the-rat	0eeea4c517	lint	2024-09-11 21:17:46 -07:00
sneakers-the-rat	95fbce1c4a	add id to index name on aligneddynamictable correctly	2024-09-11 21:16:37 -07:00
sneakers-the-rat	91b2abf07e	working thru tests for nwb file	2024-09-11 21:04:41 -07:00
sneakers-the-rat	bb59c9d465	remove unused code, nocover some debug arms	2024-09-11 19:30:04 -07:00
sneakers-the-rat	d31ac29294	clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references	2024-09-11 19:02:15 -07:00
sneakers-the-rat	000ddde000	Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit)	2024-09-11 15:44:57 -07:00
sneakers-the-rat	27b5dddfdd	updating model generation methods, still some models being converted to str instead of being inlined, but almost there	2024-09-04 00:04:21 -07:00
sneakers-the-rat	8078492f90	CHECKPOINT WITH IT WORKING before cleanup and model regeneration	2024-09-03 17:48:36 -07:00
sneakers-the-rat	d1498a3733	checkpointing working on model loading. it's a sloggggggggg	2024-09-03 00:54:56 -07:00
sneakers-the-rat	a6934276d2	codespell	2024-09-02 13:41:41 -07:00
sneakers-the-rat	53c415d947	lint	2024-09-02 13:41:04 -07:00
sneakers-the-rat	3641d33cc8	split up fixtures and nwb fixture in particular, add --clean pytest option	2024-09-02 13:40:46 -07:00
sneakers-the-rat	49585e467a	working on grpah loading of nwb files	2024-08-31 01:47:42 -07:00
sneakers-the-rat	b555ccb199	testing nwb file, and experimenting with yaml format	2024-08-30 00:39:10 -07:00
sneakers-the-rat	a7a935d508	initial refactor	2024-08-15 23:31:40 -07:00
sneakers-the-rat	ec7a8254fe	fix tsrv test	2024-08-15 01:55:15 -07:00
sneakers-the-rat	24494b8ee4	reference vector series tests, fix model tests	2024-08-15 01:43:42 -07:00
sneakers-the-rat	ce096db349	aligned dynamictable tests	2024-08-15 00:57:44 -07:00
sneakers-the-rat	7e7cbc1ac1	fix setattr for index and data	2024-08-14 23:03:03 -07:00
sneakers-the-rat	54409c7b28	codespell istg	2024-08-14 22:27:01 -07:00
sneakers-the-rat	36add1a306	region tests	2024-08-14 22:17:03 -07:00
sneakers-the-rat	7cb8eea6fe	lint	2024-08-14 00:21:48 -07:00
sneakers-the-rat	b610f32c4b	vectordata indexing tests	2024-08-14 00:21:06 -07:00
sneakers-the-rat	5780947fe6	indexing tests, fix for pytest 8, logging tests	2024-08-14 00:09:24 -07:00
sneakers-the-rat	43ff3503dc	more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable	2024-08-13 23:38:53 -07:00
sneakers-the-rat	01e46f7531	Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns	2024-08-13 21:25:56 -07:00
sneakers-the-rat	0a93195726	lint	2024-08-12 22:59:15 -07:00
sneakers-the-rat	06a18c23a8	working aligned dynamic table and TimeSeriesReferenceVectorData	2024-08-12 22:57:00 -07:00
sneakers-the-rat	0452a4359f	add logging. less janky adapter instantiation using model validators. correctly propagate properties from ancestor classes when building	2024-08-12 18:48:59 -07:00
sneakers-the-rat	92d28baedd	coercion for extra columns passed as arrays	2024-08-07 20:23:18 -07:00
sneakers-the-rat	cebb21993d	actually fix indexing	2024-08-07 19:22:29 -07:00
sneakers-the-rat	362965daf5	correct test for equality for series	2024-08-07 18:56:01 -07:00
sneakers-the-rat	9e7c53344d	oop	2024-08-07 02:28:06 -07:00
sneakers-the-rat	a9909485a4	my god it works but what have i done	2024-08-07 02:03:04 -07:00
sneakers-the-rat	a993ee10f2	continue removing nptyping, actually fix indexing	2024-08-06 21:40:23 -07:00
sneakers-the-rat	3ee7c68e15	fix array casting for dtypes that have a shape attr but nothing in it	2024-08-06 20:41:00 -07:00
sneakers-the-rat	edea802ff1	remove dask, nptyping	2024-08-06 20:35:23 -07:00
sneakers-the-rat	a11d3d042e	working ragged array indexing before rebuilding models	2024-08-06 19:44:04 -07:00
sneakers-the-rat	c2e663eca0	fuckin LINT	2024-08-05 21:12:34 -07:00
sneakers-the-rat	6431afa7e5	update tests	2024-08-05 21:11:12 -07:00