Commit graph

261 commits

Author SHA1 Message Date
8078492f90
CHECKPOINT WITH IT WORKING before cleanup and model regeneration 2024-09-03 17:48:36 -07:00
d1498a3733
checkpointing working on model loading. it's a sloggggggggg 2024-09-03 00:54:56 -07:00
676d42d4f5
instantiate ValidationError according to https://github.com/pydantic/pydantic/issues/6734 2024-09-02 19:00:15 -07:00
ee35e5921b
exclude metadata vars from column and category checks 2024-09-02 18:50:48 -07:00
97135c14f2
update models to correctly handle ElementIdentifiers 2024-09-02 18:46:02 -07:00
a6934276d2
codespell 2024-09-02 13:41:41 -07:00
53c415d947
lint 2024-09-02 13:41:04 -07:00
3641d33cc8
split up fixtures and nwb fixture in particular, add --clean pytest option 2024-09-02 13:40:46 -07:00
49585e467a
working on grpah loading of nwb files 2024-08-31 01:47:42 -07:00
b555ccb199
testing nwb file, and experimenting with yaml format 2024-08-30 00:39:10 -07:00
fac18ab147
copy and overwrite rather than shutil.move in generate 2024-08-27 20:49:53 -07:00
798b92de6b
name change in imports from schema -> is_schema 2024-08-20 23:21:40 -07:00
cc334ae195
lint 2024-08-20 23:12:01 -07:00
582ac5f09c
parallel builds, remove monkeypatches 2024-08-20 22:45:24 -07:00
0c51f00596
aha fix black formatting include, generate core by cloning into tmp directory 2024-08-20 20:26:00 -07:00
bb3512723f
oh right moved schemas too 2024-08-15 23:38:09 -07:00
8375fe1e11
lint and lock 2024-08-15 23:34:14 -07:00
a7a935d508
initial refactor 2024-08-15 23:31:40 -07:00
ec7a8254fe
fix tsrv test 2024-08-15 01:55:15 -07:00
3cda6c3e7c
lint 2024-08-15 01:48:34 -07:00
f5a4173494
update models 2024-08-15 01:47:55 -07:00
24494b8ee4
reference vector series tests, fix model tests 2024-08-15 01:43:42 -07:00
10965743eb
regenerate models 2024-08-15 01:01:47 -07:00
ce096db349
aligned dynamictable tests 2024-08-15 00:57:44 -07:00
7e7cbc1ac1
fix setattr for index and data 2024-08-14 23:03:03 -07:00
54409c7b28
codespell istg 2024-08-14 22:27:01 -07:00
b601027ef6
lint 2024-08-14 22:26:29 -07:00
36add1a306
region tests 2024-08-14 22:17:03 -07:00
7cb8eea6fe
lint 2024-08-14 00:21:48 -07:00
b610f32c4b
vectordata indexing tests 2024-08-14 00:21:06 -07:00
5780947fe6
indexing tests, fix for pytest 8, logging tests 2024-08-14 00:09:24 -07:00
d61d1ecf22
regenerate models 2024-08-13 23:39:11 -07:00
43ff3503dc
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable 2024-08-13 23:38:53 -07:00
980db25b15
regenerate models 2024-08-13 21:26:50 -07:00
01e46f7531
Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns 2024-08-13 21:25:56 -07:00
50005d33e5
fuckin codespell.
also don't double run tests
2024-08-13 19:11:46 -07:00
1715043c01
lint 2024-08-13 19:09:43 -07:00
9bd36340d7
eager resolution of hdmf namespace when loaded from yaml 2024-08-13 19:08:36 -07:00
0a93195726
lint 2024-08-12 22:59:15 -07:00
6c07b87ba0
regenerate models 2024-08-12 22:57:32 -07:00
06a18c23a8
working aligned dynamic table and TimeSeriesReferenceVectorData 2024-08-12 22:57:00 -07:00
dd99ac24eb
regenerate models 2024-08-12 19:25:48 -07:00
994b79e0f2
actually no that's stupid, linkml handles inheritance except for the one special case of compound dtypes which aren't a thing in linkml and are here used exclusively for 1d vectors. 2024-08-12 19:25:12 -07:00
0452a4359f
add logging. less janky adapter instantiation using model validators. correctly propagate properties from ancestor classes when building 2024-08-12 18:48:59 -07:00
c09b633cda
lint 2024-08-08 00:32:24 -07:00
54c18e333e
initial draft of aligned dynamic table before testing and refining. switch pandas import to module-level 2024-08-08 00:31:41 -07:00
92d28baedd
coercion for extra columns passed as arrays 2024-08-07 20:23:18 -07:00
cebb21993d
actually fix indexing 2024-08-07 19:22:29 -07:00
362965daf5
correct test for equality for series 2024-08-07 18:56:01 -07:00
9e7c53344d
oop 2024-08-07 02:28:06 -07:00