Commit graph

275 commits

Author SHA1 Message Date
03ba6568a3
lint 2024-09-19 19:21:03 -07:00
1d27c6a259
correctly generating rolled down classes. model update to follow 2024-09-19 19:17:59 -07:00
cad57554fd
get ting there, working rolldown of extra attributes, but something still funny in patchclampseries children w.r.t. losing attributes in data 2024-09-13 23:05:34 -07:00
749703e077
partially functioning rolldown, but getting some wonky results - missing attributes in nested inheritance, and the models are now extremely noisy, creating the same fields over and over even when they aren't overridden or modified by the child class. Need to redo the rolldown, make it less generic, don't dump to dicts, merge in a more targeted way. 2024-09-13 02:42:01 -07:00
880352d9a4
v0.2.0 of nwb_schema_language - parentization 2024-09-12 22:40:14 -07:00
0eeea4c517
lint 2024-09-11 21:17:46 -07:00
95fbce1c4a
add id to index name on aligneddynamictable correctly 2024-09-11 21:16:37 -07:00
91b2abf07e
working thru tests for nwb file 2024-09-11 21:04:41 -07:00
bb59c9d465
remove unused code, nocover some debug arms 2024-09-11 19:30:04 -07:00
d31ac29294
clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references 2024-09-11 19:02:15 -07:00
1f1325e4aa
bump version of dependant nwb-models 2024-09-11 16:11:55 -07:00
dfcb395295
regenerate models 2024-09-11 15:50:09 -07:00
000ddde000
Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit) 2024-09-11 15:44:57 -07:00
27b5dddfdd
updating model generation methods, still some models being converted to str instead of being inlined, but almost there 2024-09-04 00:04:21 -07:00
8078492f90
CHECKPOINT WITH IT WORKING before cleanup and model regeneration 2024-09-03 17:48:36 -07:00
d1498a3733
checkpointing working on model loading. it's a sloggggggggg 2024-09-03 00:54:56 -07:00
676d42d4f5
instantiate ValidationError according to https://github.com/pydantic/pydantic/issues/6734 2024-09-02 19:00:15 -07:00
ee35e5921b
exclude metadata vars from column and category checks 2024-09-02 18:50:48 -07:00
97135c14f2
update models to correctly handle ElementIdentifiers 2024-09-02 18:46:02 -07:00
a6934276d2
codespell 2024-09-02 13:41:41 -07:00
53c415d947
lint 2024-09-02 13:41:04 -07:00
3641d33cc8
split up fixtures and nwb fixture in particular, add --clean pytest option 2024-09-02 13:40:46 -07:00
49585e467a
working on grpah loading of nwb files 2024-08-31 01:47:42 -07:00
b555ccb199
testing nwb file, and experimenting with yaml format 2024-08-30 00:39:10 -07:00
fac18ab147
copy and overwrite rather than shutil.move in generate 2024-08-27 20:49:53 -07:00
798b92de6b
name change in imports from schema -> is_schema 2024-08-20 23:21:40 -07:00
cc334ae195
lint 2024-08-20 23:12:01 -07:00
582ac5f09c
parallel builds, remove monkeypatches 2024-08-20 22:45:24 -07:00
0c51f00596
aha fix black formatting include, generate core by cloning into tmp directory 2024-08-20 20:26:00 -07:00
bb3512723f
oh right moved schemas too 2024-08-15 23:38:09 -07:00
8375fe1e11
lint and lock 2024-08-15 23:34:14 -07:00
a7a935d508
initial refactor 2024-08-15 23:31:40 -07:00
ec7a8254fe
fix tsrv test 2024-08-15 01:55:15 -07:00
3cda6c3e7c
lint 2024-08-15 01:48:34 -07:00
f5a4173494
update models 2024-08-15 01:47:55 -07:00
24494b8ee4
reference vector series tests, fix model tests 2024-08-15 01:43:42 -07:00
10965743eb
regenerate models 2024-08-15 01:01:47 -07:00
ce096db349
aligned dynamictable tests 2024-08-15 00:57:44 -07:00
7e7cbc1ac1
fix setattr for index and data 2024-08-14 23:03:03 -07:00
54409c7b28
codespell istg 2024-08-14 22:27:01 -07:00
b601027ef6
lint 2024-08-14 22:26:29 -07:00
36add1a306
region tests 2024-08-14 22:17:03 -07:00
7cb8eea6fe
lint 2024-08-14 00:21:48 -07:00
b610f32c4b
vectordata indexing tests 2024-08-14 00:21:06 -07:00
5780947fe6
indexing tests, fix for pytest 8, logging tests 2024-08-14 00:09:24 -07:00
d61d1ecf22
regenerate models 2024-08-13 23:39:11 -07:00
43ff3503dc
more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable 2024-08-13 23:38:53 -07:00
980db25b15
regenerate models 2024-08-13 21:26:50 -07:00
01e46f7531
Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns 2024-08-13 21:25:56 -07:00
50005d33e5
fuckin codespell.
also don't double run tests
2024-08-13 19:11:46 -07:00