136 commits

Author	SHA1	Message	Date
sneakers-the-rat	f50275473c	All ruff and black fixes done	2024-07-01 23:52:32 -07:00
sneakers-the-rat	7c6e69c87e	ruff unsafe fixes	2024-07-01 23:05:47 -07:00
sneakers-the-rat	084bceaa2e	continuing manual ruff fixes	2024-07-01 22:58:55 -07:00
sneakers-the-rat	3768e3ce0d	enable black preview and automatic linebreaks in long strings	2024-07-01 22:12:16 -07:00
sneakers-the-rat	d4a0c82d00	some ruff fixes	2024-07-01 22:09:49 -07:00
sneakers-the-rat	07aa879bb9	ruff automatic fixes	2024-07-01 21:44:35 -07:00
sneakers-the-rat	79fc7f23ad	black formatting	2024-07-01 21:23:31 -07:00
sneakers-the-rat	3e5e73d186	add formatting config	2024-07-01 21:22:35 -07:00
sneakers-the-rat	a0f0b06d66	bump version	2024-07-01 19:01:15 -07:00
sneakers-the-rat	1eddf04400	get tests running again	2024-07-01 18:59:21 -07:00
sneakers-the-rat	25536c053e	docs dependencies	2024-07-01 16:35:10 -07:00
sneakers-the-rat	9eb4f0dec6	conversion from poetry to pdm	2024-07-01 16:19:13 -07:00
sneakers-the-rat	d522dd84a5	merge from origin	2024-07-01 15:46:23 -07:00
sneakers-the-rat	4296b27538	catchup with prior work	2024-07-01 15:44:26 -07:00
Yaroslav Halchenko	2e2ecf10c0	[DATALAD RUNCMD] Do interactive fixing of leftover ambigous typos ... === Do not change lines below === { "chain": [], "cmd": "codespell -w -i 3 -C 2", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^	2024-04-17 16:00:34 -04:00
Yaroslav Halchenko	63a405f4aa	[DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos ... === Do not change lines below === { "chain": [], "cmd": "codespell -w || :", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^	2024-04-17 15:59:53 -04:00
Yaroslav Halchenko	190a5de0e3	Use _ for a variable which is not used	2024-04-17 15:55:52 -04:00
Jonny Saunders	4ee97263ed	Cleanup ndarray validator ... Remove outdated comments, rename inner function to match	2024-01-16 02:06:08 -08:00
sneakers-the-rat	eac5ef4c80	more docs work ... move conftest to root so we find doctests? maybe we don't want to keep that tho	2023-10-19 21:20:50 -07:00
sneakers-the-rat	23a5412854	remove unused code	2023-10-19 04:01:48 -07:00
sneakers-the-rat	2276a7b501	docs, but need to sleep, come back in morning	2023-10-19 02:52:15 -07:00
sneakers-the-rat	dd956b35c3	Still working on docs! ... Added ability to index datasets wtih arrays with getitem	2023-10-18 21:18:02 -07:00
sneakers-the-rat	af5b947d12	a bunch of docs stuff	2023-10-18 01:01:15 -07:00
sneakers-the-rat	464d95d64d	omfg another one. i'm done	2023-10-12 00:19:40 -07:00
sneakers-the-rat	d2185ee1c3	for pydantic provider test by escaping additional bad chars in numpy field name	2023-10-12 00:02:52 -07:00
sneakers-the-rat	3101797b0d	don't render jinja template as having a literal "keys" attr instead of item ... also remove unnecessary warnings	2023-10-11 23:28:22 -07:00
sneakers-the-rat	fee86135a3	omfg i hate this bug so much if this works i'll be so mad	2023-10-11 22:38:46 -07:00
sneakers-the-rat	92b1a6aac0	holy hell it was a TYPE COERCION in the way linkml handles annotations and a version mismatch between CI and local ... https://github.com/linkml/linkml-model/pull/162	2023-10-11 22:30:26 -07:00
sneakers-the-rat	0d29ed279f	hold up can this really be the bug	2023-10-11 22:21:44 -07:00
sneakers-the-rat	338369a540	trying to debug on CI by abusing warnings lol	2023-10-11 22:07:01 -07:00
sneakers-the-rat	f54f5a8153	trying to debug on CI by abusing warnings lol	2023-10-11 21:57:39 -07:00
sneakers-the-rat	3164f92387	trying to debug on CI by abusing warnings lol	2023-10-11 21:49:45 -07:00
sneakers-the-rat	282acc063e	trying to debug on CI by abusing warnings lol	2023-10-11 21:38:29 -07:00
sneakers-the-rat	3a426454c6	trying to debug on CI by abusing warnings lol	2023-10-11 21:31:00 -07:00
sneakers-the-rat	52754112aa	make allow_repo an instance-level setting	2023-10-11 20:55:03 -07:00
sneakers-the-rat	38d83f3279	fix JsonObj bug https://github.com/linkml/linkml/issues/1665	2023-10-11 20:42:27 -07:00
sneakers-the-rat	d4493146b5	give language elements a schema annotation	2023-10-11 20:09:22 -07:00
sneakers-the-rat	d9d62618bc	Add source namespace to all generated linkml schemas ... change `namespace` annotation to `is_namespace` and use `namespace` for name of namespace dont change commit when commit is None - otherwise always reset to recent version when we don't intend to	2023-10-11 20:03:08 -07:00
sneakers-the-rat	c6ca97e010	Correctly clone fixed versions in tests, adjusted fixed values to match, set default git clone temp dir from config variables	2023-10-11 19:24:08 -07:00
sneakers-the-rat	c4d42cdacf	remove split from schema adapter because it turned out to be a bad idea, we just use tree_root instead	2023-10-11 18:32:31 -07:00
sneakers-the-rat	615b006e4a	updating nwb_schema_language to have proper single/multi fields for author/contact	2023-10-10 01:08:25 -07:00
sneakers-the-rat	825b5914db	allow lists and singletons in generator	2023-10-10 00:50:51 -07:00
sneakers-the-rat	2d1fe3ad96	read is functional again, calling it a night.	2023-10-10 00:12:33 -07:00
sneakers-the-rat	729da40dfd	install hdf5	2023-10-09 23:40:31 -07:00
sneakers-the-rat	0508e3b620	re-enable truncate file test	2023-10-09 23:30:39 -07:00
sneakers-the-rat	91875dabb2	re-enable janky hdmf mapping test just to have it on the board for morale ... Fix serializing datasets	2023-10-09 23:27:33 -07:00
sneakers-the-rat	f071705ac8	remove translate	2023-10-09 23:15:46 -07:00
sneakers-the-rat	42e64dce75	Refactor dataset adapter to use check/apply style maps! ... General cleaning around maps module, getting ready to remove translate module	2023-10-09 23:06:24 -07:00
sneakers-the-rat	adaf939497	classes adapter	2023-10-09 20:13:42 -07:00
sneakers-the-rat	79397ec398	dict not list	2023-10-09 19:05:08 -07:00