268 commits

Author	SHA1	Message	Date
sneakers-the-rat	91b2abf07e	working thru tests for nwb file	2024-09-11 21:04:41 -07:00
sneakers-the-rat	bb59c9d465	remove unused code, nocover some debug arms	2024-09-11 19:30:04 -07:00
sneakers-the-rat	d31ac29294	clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references	2024-09-11 19:02:15 -07:00
sneakers-the-rat	1f1325e4aa	bump version of dependant nwb-models	2024-09-11 16:11:55 -07:00
sneakers-the-rat	dfcb395295	regenerate models	2024-09-11 15:50:09 -07:00
sneakers-the-rat	000ddde000	Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit)	2024-09-11 15:44:57 -07:00
sneakers-the-rat	27b5dddfdd	updating model generation methods, still some models being converted to str instead of being inlined, but almost there	2024-09-04 00:04:21 -07:00
sneakers-the-rat	8078492f90	CHECKPOINT WITH IT WORKING before cleanup and model regeneration	2024-09-03 17:48:36 -07:00
sneakers-the-rat	d1498a3733	checkpointing working on model loading. it's a sloggggggggg	2024-09-03 00:54:56 -07:00
sneakers-the-rat	676d42d4f5	instantiate ValidationError according to https://github.com/pydantic/pydantic/issues/6734	2024-09-02 19:00:15 -07:00
sneakers-the-rat	ee35e5921b	exclude metadata vars from column and category checks	2024-09-02 18:50:48 -07:00
sneakers-the-rat	97135c14f2	update models to correctly handle ElementIdentifiers	2024-09-02 18:46:02 -07:00
sneakers-the-rat	a6934276d2	codespell	2024-09-02 13:41:41 -07:00
sneakers-the-rat	53c415d947	lint	2024-09-02 13:41:04 -07:00
sneakers-the-rat	3641d33cc8	split up fixtures and nwb fixture in particular, add --clean pytest option	2024-09-02 13:40:46 -07:00
sneakers-the-rat	49585e467a	working on grpah loading of nwb files	2024-08-31 01:47:42 -07:00
sneakers-the-rat	b555ccb199	testing nwb file, and experimenting with yaml format	2024-08-30 00:39:10 -07:00
sneakers-the-rat	fac18ab147	copy and overwrite rather than shutil.move in generate	2024-08-27 20:49:53 -07:00
sneakers-the-rat	798b92de6b	name change in imports from schema -> is_schema	2024-08-20 23:21:40 -07:00
sneakers-the-rat	cc334ae195	lint	2024-08-20 23:12:01 -07:00
sneakers-the-rat	582ac5f09c	parallel builds, remove monkeypatches	2024-08-20 22:45:24 -07:00
sneakers-the-rat	0c51f00596	aha fix black formatting include, generate core by cloning into tmp directory	2024-08-20 20:26:00 -07:00
sneakers-the-rat	bb3512723f	oh right moved schemas too	2024-08-15 23:38:09 -07:00
sneakers-the-rat	8375fe1e11	lint and lock	2024-08-15 23:34:14 -07:00
sneakers-the-rat	a7a935d508	initial refactor	2024-08-15 23:31:40 -07:00
sneakers-the-rat	ec7a8254fe	fix tsrv test	2024-08-15 01:55:15 -07:00
sneakers-the-rat	3cda6c3e7c	lint	2024-08-15 01:48:34 -07:00
sneakers-the-rat	f5a4173494	update models	2024-08-15 01:47:55 -07:00
sneakers-the-rat	24494b8ee4	reference vector series tests, fix model tests	2024-08-15 01:43:42 -07:00
sneakers-the-rat	10965743eb	regenerate models	2024-08-15 01:01:47 -07:00
sneakers-the-rat	ce096db349	aligned dynamictable tests	2024-08-15 00:57:44 -07:00
sneakers-the-rat	7e7cbc1ac1	fix setattr for index and data	2024-08-14 23:03:03 -07:00
sneakers-the-rat	54409c7b28	codespell istg	2024-08-14 22:27:01 -07:00
sneakers-the-rat	b601027ef6	lint	2024-08-14 22:26:29 -07:00
sneakers-the-rat	36add1a306	region tests	2024-08-14 22:17:03 -07:00
sneakers-the-rat	7cb8eea6fe	lint	2024-08-14 00:21:48 -07:00
sneakers-the-rat	b610f32c4b	vectordata indexing tests	2024-08-14 00:21:06 -07:00
sneakers-the-rat	5780947fe6	indexing tests, fix for pytest 8, logging tests	2024-08-14 00:09:24 -07:00
sneakers-the-rat	d61d1ecf22	regenerate models	2024-08-13 23:39:11 -07:00
sneakers-the-rat	43ff3503dc	more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable	2024-08-13 23:38:53 -07:00
sneakers-the-rat	980db25b15	regenerate models	2024-08-13 21:26:50 -07:00
sneakers-the-rat	01e46f7531	Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns	2024-08-13 21:25:56 -07:00
sneakers-the-rat	50005d33e5	fuckin codespell. ... also don't double run tests	2024-08-13 19:11:46 -07:00
sneakers-the-rat	1715043c01	lint	2024-08-13 19:09:43 -07:00
sneakers-the-rat	9bd36340d7	eager resolution of hdmf namespace when loaded from yaml	2024-08-13 19:08:36 -07:00
sneakers-the-rat	0a93195726	lint	2024-08-12 22:59:15 -07:00
sneakers-the-rat	6c07b87ba0	regenerate models	2024-08-12 22:57:32 -07:00
sneakers-the-rat	06a18c23a8	working aligned dynamic table and TimeSeriesReferenceVectorData	2024-08-12 22:57:00 -07:00
sneakers-the-rat	dd99ac24eb	regenerate models	2024-08-12 19:25:48 -07:00
sneakers-the-rat	994b79e0f2	actually no that's stupid, linkml handles inheritance except for the one special case of compound dtypes which aren't a thing in linkml and are here used exclusively for 1d vectors.	2024-08-12 19:25:12 -07:00