2c717ea7e5
Add ruff and black checks, combine with codespell
2024-07-01 23:54:40 -07:00
f50275473c
All ruff and black fixes done
2024-07-01 23:52:32 -07:00
7c6e69c87e
ruff unsafe fixes
2024-07-01 23:05:47 -07:00
084bceaa2e
continuing manual ruff fixes
2024-07-01 22:58:55 -07:00
3768e3ce0d
enable black preview and automatic linebreaks in long strings
2024-07-01 22:12:16 -07:00
d4a0c82d00
some ruff fixes
2024-07-01 22:09:49 -07:00
07aa879bb9
ruff automatic fixes
2024-07-01 21:44:35 -07:00
79fc7f23ad
black formatting
2024-07-01 21:23:31 -07:00
3e5e73d186
add formatting config
2024-07-01 21:22:35 -07:00
7a362e5988
Merge pull request #2 from p2p-ld/pdm
...
Switch packaging to PDM
2024-07-01 19:08:07 -07:00
0150c3ca6e
add codespell exceptions
2024-07-01 19:07:12 -07:00
a0f0b06d66
bump version
2024-07-01 19:01:15 -07:00
1eddf04400
get tests running again
2024-07-01 18:59:21 -07:00
25536c053e
docs dependencies
2024-07-01 16:35:10 -07:00
48b883a588
no-op to poke readthedocs
2024-07-01 16:22:55 -07:00
9eb4f0dec6
conversion from poetry to pdm
2024-07-01 16:19:13 -07:00
d522dd84a5
merge from origin
2024-07-01 15:46:23 -07:00
4296b27538
catchup with prior work
2024-07-01 15:44:26 -07:00
661194e0a5
Merge pull request #1 from yarikoptic/enh-codespell
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Add codespell support (config, workflow to detect/not fix) and make it fix few typos
2024-04-17 17:05:10 -06:00
Yaroslav Halchenko
2e2ecf10c0
[DATALAD RUNCMD] Do interactive fixing of leftover ambigous typos
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=== Do not change lines below ===
{
"chain": [],
"cmd": "codespell -w -i 3 -C 2",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 16:00:34 -04:00
Yaroslav Halchenko
63a405f4aa
[DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos
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=== Do not change lines below ===
{
"chain": [],
"cmd": "codespell -w || :",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
2024-04-17 15:59:53 -04:00
Yaroslav Halchenko
e315ccbf35
Skip folders with produced dumps from nwb schemas
2024-04-17 15:59:48 -04:00
Yaroslav Halchenko
190a5de0e3
Use _ for a variable which is not used
2024-04-17 15:55:52 -04:00
Yaroslav Halchenko
2564f90947
Add rudimentary codespell config
2024-04-17 15:54:16 -04:00
Yaroslav Halchenko
57b37a2d95
Add github action to codespell main on push and PRs
2024-04-17 15:54:16 -04:00
4ee97263ed
Cleanup ndarray validator
...
Remove outdated comments, rename inner function to match
2024-01-16 02:06:08 -08:00
eac5ef4c80
more docs work
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move conftest to root so we find doctests? maybe we don't want to keep that tho
2023-10-19 21:20:50 -07:00
23a5412854
remove unused code
2023-10-19 04:01:48 -07:00
e331b8756e
minimal fix
2023-10-19 03:08:38 -07:00
e4eb77fe06
ipywidgets
2023-10-19 03:07:16 -07:00
c4fc342ff2
use poetry kernel and default kernel for rtd?
2023-10-19 03:00:34 -07:00
2276a7b501
docs, but need to sleep, come back in morning
2023-10-19 02:52:15 -07:00
dd956b35c3
Still working on docs!
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Added ability to index datasets wtih arrays with getitem
2023-10-18 21:18:02 -07:00
a1d2924fd3
Some headers to outline next sections
2023-10-18 01:15:23 -07:00
af5b947d12
a bunch of docs stuff
2023-10-18 01:01:15 -07:00
464d95d64d
omfg another one. i'm done
2023-10-12 00:19:40 -07:00
d2185ee1c3
for pydantic provider test by escaping additional bad chars in numpy field name
2023-10-12 00:02:52 -07:00
3101797b0d
don't render jinja template as having a literal "keys" attr instead of item
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also remove unnecessary warnings
2023-10-11 23:28:22 -07:00
fee86135a3
omfg i hate this bug so much if this works i'll be so mad
2023-10-11 22:38:46 -07:00
92b1a6aac0
holy hell it was a TYPE COERCION in the way linkml handles annotations and a version mismatch between CI and local
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https://github.com/linkml/linkml-model/pull/162
2023-10-11 22:30:26 -07:00
0d29ed279f
hold up can this really be the bug
2023-10-11 22:21:44 -07:00
338369a540
trying to debug on CI by abusing warnings lol
2023-10-11 22:07:01 -07:00
f54f5a8153
trying to debug on CI by abusing warnings lol
2023-10-11 21:57:39 -07:00
3164f92387
trying to debug on CI by abusing warnings lol
2023-10-11 21:49:45 -07:00
282acc063e
trying to debug on CI by abusing warnings lol
2023-10-11 21:38:29 -07:00
3a426454c6
trying to debug on CI by abusing warnings lol
2023-10-11 21:31:00 -07:00
52754112aa
make allow_repo an instance-level setting
2023-10-11 20:55:03 -07:00
38d83f3279
fix JsonObj bug https://github.com/linkml/linkml/issues/1665
2023-10-11 20:42:27 -07:00
d4493146b5
give language elements a schema annotation
2023-10-11 20:09:22 -07:00
d9d62618bc
Add source namespace to all generated linkml schemas
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change `namespace` annotation to `is_namespace` and use `namespace` for name of namespace
dont change commit when commit is None - otherwise always reset to recent version when we don't intend to
2023-10-11 20:03:08 -07:00