Commit graph

229 commits

Author SHA1 Message Date
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups. 2024-08-05 16:05:44 -07:00
e72c860edd
update models with shorter names 2024-08-05 14:19:03 -07:00
9bfee3548e
make names less lengthy by only contatenating one layer of nesting with __ 2024-08-05 14:09:50 -07:00
b2d7b12a78
update numpydantic version and relock 2024-07-31 02:07:44 -07:00
66369c7686
no op to update github cache? 2024-07-31 02:00:31 -07:00
2fef717a62
fix attr access in linkml provider result 2024-07-31 01:58:31 -07:00
0d10ba9d75
regenerate models, lint 2024-07-31 01:56:48 -07:00
1d527d8f71
fix hdmf forwardrefs, remove numpy types temporarily 2024-07-31 01:54:14 -07:00
776078ae67
add pandas 2024-07-31 01:30:06 -07:00
38e8a6f7a0
lint 2024-07-31 01:27:45 -07:00
abf1b0e6c0
update hdmf models/schema 2024-07-31 01:17:39 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins 2024-07-31 01:13:31 -07:00
723f53035d
Merge pull request #4 from p2p-ld/linkml-arrays
Convert to linkml-arrays :)
2024-07-29 19:19:48 -07:00
c39d464e89
fix tests - update docstring tests, fix numpydantic import injects 2024-07-29 18:20:30 -07:00
f08216a43f
update models 2024-07-29 18:19:34 -07:00
19e49cf68d
regenerate models after fixing classvar mutation in numpydantic linkml branch 2024-07-29 17:34:28 -07:00
f955c2acc3
getting spanked by codespell as usual 2024-07-29 16:31:34 -07:00
2f0af1ef3c
linting continues 2024-07-29 16:30:53 -07:00
73ae5be91c
lint 2024-07-29 16:28:48 -07:00
04b08f10fc
wtf and a third commit, i gotta figure out what thats about 2024-07-29 16:22:29 -07:00
011902d2cb
update models round 2 for how pycharm always misses half the files for some reason... 2024-07-29 16:18:23 -07:00
76fb58e783
update models 2024-07-29 16:16:02 -07:00
e0dde2c52f
translation notes 2024-07-29 15:30:51 -07:00
baa5471af7
getting started doing hdmf mixins but am tired 2024-07-26 21:58:07 -07:00
c98f25f973
Named generic for dynamictableregions, etc. 2024-07-26 19:54:35 -07:00
3d8403e9e3
lint 2024-07-24 22:49:35 -07:00
af11bb61ec
fix imports being inside the any_of range, more manual inspection before finishing for the night 2024-07-24 22:47:06 -07:00
781b667952
working pydantic provider (at least superficially) 2024-07-24 21:51:55 -07:00
974058ce5f
assorted cleanings but i am tired 2024-07-19 21:28:24 -07:00
43187bfa3e
add numpy type to language element types 2024-07-19 20:50:48 -07:00
2e7670a2bd
yaml peek to quickly find the value of a key 2024-07-19 20:50:18 -07:00
27d18b69d8
continue stripping out old linkml monkeypatching 2024-07-18 01:01:29 -07:00
ec843a508b
update branch for linkml 2024-07-18 00:39:56 -07:00
1920c9f292
continue removing NDArray type, since it's in numpydantic now. 2024-07-10 00:20:01 -07:00
d6750f8df1
we don't need blosc tho 2024-07-10 00:09:17 -07:00
878c51e069
we do need black as a runtime dep 2024-07-10 00:05:41 -07:00
b83865352c
the hell was that 2024-07-10 00:02:39 -07:00
bf7f62fd8f
lint 2024-07-09 23:54:28 -07:00
2f59f0a69b
refactor providers into modules 2024-07-09 23:52:58 -07:00
efd05724e3
minor todos 2024-07-09 23:15:29 -07:00
b6af8c9718
lint 2024-07-09 03:32:37 -07:00
f4d397cde1
more docs for dataset adapters.
also:
- fix search for initial - in dataset doctest
- don't clear git repos on repeated test runs
- fix string handling in load_yaml
2024-07-09 03:26:45 -07:00
ce902476d1
working version of pretty doctests with sybil :) 2024-07-09 00:27:22 -07:00
5ccc9e6fbd
black format models 2024-07-09 00:24:08 -07:00
34c8be3a2c
functional docs build 2024-07-08 21:37:02 -07:00
fdf80666fb
regenerate models with numpydantic 2024-07-08 19:29:48 -07:00
8036b3316d
regenerate models 2024-07-08 19:12:11 -07:00
78de59a0f1
regenerate models 2024-07-08 19:10:19 -07:00
b9ed7c0026
testing custom directive for doctests 2024-07-08 19:07:21 -07:00
0cbf1ac1b2
how come ide always misses the schema lol 2024-07-03 23:36:58 -07:00