Commit graph

335 commits

Author SHA1 Message Date
c06859a537
first impl of dynamictable working! 2024-08-05 20:51:52 -07:00
e5d1cc52de
regenerate models 2024-08-05 18:41:53 -07:00
da6d0d8608
correctly handle attributes 2024-08-05 18:41:38 -07:00
652ddb3b48
update hdmf common table 2024-08-05 17:09:58 -07:00
374bd8971d
fix name array -> value in hdmf mixins 2024-08-05 17:06:59 -07:00
0a150d6bc2
update models 2024-08-05 16:06:05 -07:00
b3b5b9d793
unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups. 2024-08-05 16:05:44 -07:00
e72c860edd
update models with shorter names 2024-08-05 14:19:03 -07:00
9bfee3548e
make names less lengthy by only contatenating one layer of nesting with __ 2024-08-05 14:09:50 -07:00
b2d7b12a78
update numpydantic version and relock 2024-07-31 02:07:44 -07:00
66369c7686
no op to update github cache? 2024-07-31 02:00:31 -07:00
2fef717a62
fix attr access in linkml provider result 2024-07-31 01:58:31 -07:00
0d10ba9d75
regenerate models, lint 2024-07-31 01:56:48 -07:00
1d527d8f71
fix hdmf forwardrefs, remove numpy types temporarily 2024-07-31 01:54:14 -07:00
776078ae67
add pandas 2024-07-31 01:30:06 -07:00
38e8a6f7a0
lint 2024-07-31 01:27:45 -07:00
abf1b0e6c0
update hdmf models/schema 2024-07-31 01:17:39 -07:00
d118477d8a
add dynamictable, vectordata, vectorindex mixins 2024-07-31 01:13:31 -07:00
723f53035d
Merge pull request #4 from p2p-ld/linkml-arrays
Convert to linkml-arrays :)
2024-07-29 19:19:48 -07:00
c39d464e89
fix tests - update docstring tests, fix numpydantic import injects 2024-07-29 18:20:30 -07:00
f08216a43f
update models 2024-07-29 18:19:34 -07:00
19e49cf68d
regenerate models after fixing classvar mutation in numpydantic linkml branch 2024-07-29 17:34:28 -07:00
f955c2acc3
getting spanked by codespell as usual 2024-07-29 16:31:34 -07:00
2f0af1ef3c
linting continues 2024-07-29 16:30:53 -07:00
73ae5be91c
lint 2024-07-29 16:28:48 -07:00
04b08f10fc
wtf and a third commit, i gotta figure out what thats about 2024-07-29 16:22:29 -07:00
011902d2cb
update models round 2 for how pycharm always misses half the files for some reason... 2024-07-29 16:18:23 -07:00
76fb58e783
update models 2024-07-29 16:16:02 -07:00
e0dde2c52f
translation notes 2024-07-29 15:30:51 -07:00
baa5471af7
getting started doing hdmf mixins but am tired 2024-07-26 21:58:07 -07:00
c98f25f973
Named generic for dynamictableregions, etc. 2024-07-26 19:54:35 -07:00
3d8403e9e3
lint 2024-07-24 22:49:35 -07:00
af11bb61ec
fix imports being inside the any_of range, more manual inspection before finishing for the night 2024-07-24 22:47:06 -07:00
781b667952
working pydantic provider (at least superficially) 2024-07-24 21:51:55 -07:00
974058ce5f
assorted cleanings but i am tired 2024-07-19 21:28:24 -07:00
43187bfa3e
add numpy type to language element types 2024-07-19 20:50:48 -07:00
2e7670a2bd
yaml peek to quickly find the value of a key 2024-07-19 20:50:18 -07:00
27d18b69d8
continue stripping out old linkml monkeypatching 2024-07-18 01:01:29 -07:00
ec843a508b
update branch for linkml 2024-07-18 00:39:56 -07:00
1920c9f292
continue removing NDArray type, since it's in numpydantic now. 2024-07-10 00:20:01 -07:00
d6750f8df1
we don't need blosc tho 2024-07-10 00:09:17 -07:00
878c51e069
we do need black as a runtime dep 2024-07-10 00:05:41 -07:00
b83865352c
the hell was that 2024-07-10 00:02:39 -07:00
bf7f62fd8f
lint 2024-07-09 23:54:28 -07:00
2f59f0a69b
refactor providers into modules 2024-07-09 23:52:58 -07:00
efd05724e3
minor todos 2024-07-09 23:15:29 -07:00
b6af8c9718
lint 2024-07-09 03:32:37 -07:00
f4d397cde1
more docs for dataset adapters.
also:
- fix search for initial - in dataset doctest
- don't clear git repos on repeated test runs
- fix string handling in load_yaml
2024-07-09 03:26:45 -07:00
ce902476d1
working version of pretty doctests with sybil :) 2024-07-09 00:27:22 -07:00
5ccc9e6fbd
black format models 2024-07-09 00:24:08 -07:00