335 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
sneakers-the-rat	f9f1d49fca	working complete, strict validating io :)	2024-09-26 01:02:16 -07:00
sneakers-the-rat	886d3db860	model checkpoint before fixing group generation	2024-09-25 22:58:02 -07:00
sneakers-the-rat	911a3ddb61	cast to value in container classes	2024-09-25 21:18:09 -07:00
sneakers-the-rat	fc6f60ad61	fix hdmf inheritance during testing, error handling	2024-09-25 20:41:53 -07:00
sneakers-the-rat	8993014832	make the tests pass again - add validator to do the opposite of coerce_value, try to pass the input as the `value` field of the model. fix test assumptions and model creation. ... model update to follow	2024-09-19 22:43:29 -07:00
sneakers-the-rat	734088f18e	remove commented out pdb call, add more inline docs to rolldown	2024-09-19 19:28:17 -07:00
sneakers-the-rat	e06c8ad656	model update	2024-09-19 19:22:33 -07:00
sneakers-the-rat	03ba6568a3	lint	2024-09-19 19:21:03 -07:00
sneakers-the-rat	1d27c6a259	correctly generating rolled down classes. model update to follow	2024-09-19 19:17:59 -07:00
sneakers-the-rat	cad57554fd	get ting there, working rolldown of extra attributes, but something still funny in patchclampseries children w.r.t. losing attributes in data	2024-09-13 23:05:34 -07:00
sneakers-the-rat	749703e077	partially functioning rolldown, but getting some wonky results - missing attributes in nested inheritance, and the models are now extremely noisy, creating the same fields over and over even when they aren't overridden or modified by the child class. Need to redo the rolldown, make it less generic, don't dump to dicts, merge in a more targeted way.	2024-09-13 02:42:01 -07:00
sneakers-the-rat	880352d9a4	v0.2.0 of nwb_schema_language - parentization	2024-09-12 22:40:14 -07:00
Jonny Saunders	f94a144d75	Merge pull request #10 from p2p-ld/nwb-loader ... NWB Loader	2024-09-11 21:24:37 -07:00
sneakers-the-rat	0eeea4c517	lint	2024-09-11 21:17:46 -07:00
sneakers-the-rat	95fbce1c4a	add id to index name on aligneddynamictable correctly	2024-09-11 21:16:37 -07:00
sneakers-the-rat	91b2abf07e	working thru tests for nwb file	2024-09-11 21:04:41 -07:00
sneakers-the-rat	bb59c9d465	remove unused code, nocover some debug arms	2024-09-11 19:30:04 -07:00
sneakers-the-rat	d31ac29294	clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references	2024-09-11 19:02:15 -07:00
sneakers-the-rat	1f1325e4aa	bump version of dependant nwb-models	2024-09-11 16:11:55 -07:00
sneakers-the-rat	b76b0fddf3	bump nwb-models version	2024-09-11 16:00:30 -07:00
sneakers-the-rat	3f360c2cc3	use in-repo version of models	2024-09-11 15:56:45 -07:00
sneakers-the-rat	dfcb395295	regenerate models	2024-09-11 15:50:09 -07:00
sneakers-the-rat	000ddde000	Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit)	2024-09-11 15:44:57 -07:00
sneakers-the-rat	27b5dddfdd	updating model generation methods, still some models being converted to str instead of being inlined, but almost there	2024-09-04 00:04:21 -07:00
sneakers-the-rat	8078492f90	CHECKPOINT WITH IT WORKING before cleanup and model regeneration	2024-09-03 17:48:36 -07:00
sneakers-the-rat	d1498a3733	checkpointing working on model loading. it's a sloggggggggg	2024-09-03 00:54:56 -07:00
sneakers-the-rat	cd3d7ca78e	model update	2024-09-03 00:54:38 -07:00
sneakers-the-rat	676d42d4f5	instantiate ValidationError according to https://github.com/pydantic/pydantic/issues/6734	2024-09-02 19:00:15 -07:00
sneakers-the-rat	ee35e5921b	exclude metadata vars from column and category checks	2024-09-02 18:50:48 -07:00
sneakers-the-rat	97135c14f2	update models to correctly handle ElementIdentifiers	2024-09-02 18:46:02 -07:00
sneakers-the-rat	a6934276d2	codespell	2024-09-02 13:41:41 -07:00
sneakers-the-rat	53c415d947	lint	2024-09-02 13:41:04 -07:00
sneakers-the-rat	3641d33cc8	split up fixtures and nwb fixture in particular, add --clean pytest option	2024-09-02 13:40:46 -07:00
sneakers-the-rat	49585e467a	working on grpah loading of nwb files	2024-08-31 01:47:42 -07:00
sneakers-the-rat	b555ccb199	testing nwb file, and experimenting with yaml format	2024-08-30 00:39:10 -07:00
Jonny Saunders	0e4058520a	Merge pull request #9 from p2p-ld/perf-generator ... [perf] Parallel builds	2024-08-27 21:08:13 -07:00
sneakers-the-rat	a60499080c	simplify gitattributes	2024-08-27 21:04:56 -07:00
sneakers-the-rat	79a7beb1c6	gitattributes to exclude from diffs	2024-08-27 21:01:22 -07:00
sneakers-the-rat	bb900774d8	gitattributes to exclude from diffs	2024-08-27 21:00:10 -07:00
sneakers-the-rat	81b475a2d4	regenerate models with sorted imports	2024-08-27 20:50:23 -07:00
sneakers-the-rat	fac18ab147	copy and overwrite rather than shutil.move in generate	2024-08-27 20:49:53 -07:00
sneakers-the-rat	798b92de6b	name change in imports from schema -> is_schema	2024-08-20 23:21:40 -07:00
sneakers-the-rat	fc8cca0e16	correct cache invalidation	2024-08-20 23:17:44 -07:00
sneakers-the-rat	cc334ae195	lint	2024-08-20 23:12:01 -07:00
sneakers-the-rat	fe7e9f89ca	regenerate models	2024-08-20 23:04:05 -07:00
sneakers-the-rat	582ac5f09c	parallel builds, remove monkeypatches	2024-08-20 22:45:24 -07:00
Jonny Saunders	98a9975406	Merge pull request #8 from p2p-ld/separate-nwb-models ... Separate models into `nwb_models` package	2024-08-20 20:42:24 -07:00
sneakers-the-rat	0c51f00596	aha fix black formatting include, generate core by cloning into tmp directory	2024-08-20 20:26:00 -07:00
sneakers-the-rat	d03e4107a4	install models, editable install	2024-08-20 20:07:41 -07:00
sneakers-the-rat	647bdae442	add diff	2024-08-20 20:05:48 -07:00