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5780947fe6
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indexing tests, fix for pytest 8, logging tests
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2024-08-14 00:09:24 -07:00 |
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d61d1ecf22
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regenerate models
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2024-08-13 23:39:11 -07:00 |
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43ff3503dc
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more texts. Fix coercion with ndarrays and vectordata, incl numpydantic 1.3.3 making ndarray types callable
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2024-08-13 23:38:53 -07:00 |
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980db25b15
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regenerate models
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2024-08-13 21:26:50 -07:00 |
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01e46f7531
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Make VectorData and VectorIndex generics to ensure coercion to VectorData for declared columns
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2024-08-13 21:25:56 -07:00 |
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50005d33e5
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fuckin codespell.
also don't double run tests
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2024-08-13 19:11:46 -07:00 |
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1715043c01
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lint
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2024-08-13 19:09:43 -07:00 |
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9bd36340d7
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eager resolution of hdmf namespace when loaded from yaml
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2024-08-13 19:08:36 -07:00 |
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0a93195726
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lint
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2024-08-12 22:59:15 -07:00 |
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6c07b87ba0
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regenerate models
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2024-08-12 22:57:32 -07:00 |
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06a18c23a8
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working aligned dynamic table and TimeSeriesReferenceVectorData
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2024-08-12 22:57:00 -07:00 |
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dd99ac24eb
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regenerate models
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2024-08-12 19:25:48 -07:00 |
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994b79e0f2
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actually no that's stupid, linkml handles inheritance except for the one special case of compound dtypes which aren't a thing in linkml and are here used exclusively for 1d vectors.
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2024-08-12 19:25:12 -07:00 |
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0452a4359f
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add logging. less janky adapter instantiation using model validators. correctly propagate properties from ancestor classes when building
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2024-08-12 18:48:59 -07:00 |
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c09b633cda
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lint
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2024-08-08 00:32:24 -07:00 |
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54c18e333e
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initial draft of aligned dynamic table before testing and refining. switch pandas import to module-level
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2024-08-08 00:31:41 -07:00 |
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92d28baedd
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coercion for extra columns passed as arrays
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2024-08-07 20:23:18 -07:00 |
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cebb21993d
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actually fix indexing
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2024-08-07 19:22:29 -07:00 |
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362965daf5
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correct test for equality for series
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2024-08-07 18:56:01 -07:00 |
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9e7c53344d
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oop
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2024-08-07 02:28:06 -07:00 |
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a9909485a4
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my god it works but what have i done
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2024-08-07 02:03:04 -07:00 |
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a993ee10f2
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continue removing nptyping, actually fix indexing
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2024-08-06 21:40:23 -07:00 |
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3ee7c68e15
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fix array casting for dtypes that have a shape attr but nothing in it
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2024-08-06 20:41:00 -07:00 |
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edea802ff1
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remove dask, nptyping
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2024-08-06 20:35:23 -07:00 |
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a309c25c3d
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regenerate model, lint
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2024-08-06 19:57:45 -07:00 |
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a11d3d042e
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working ragged array indexing before rebuilding models
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2024-08-06 19:44:04 -07:00 |
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fbb06dac52
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use coveralls action
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2024-08-06 01:46:20 -07:00 |
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c2e663eca0
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fuckin LINT
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2024-08-05 21:12:34 -07:00 |
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6431afa7e5
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update tests
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2024-08-05 21:11:12 -07:00 |
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83dd59d30d
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lint!
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2024-08-05 20:59:01 -07:00 |
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51ceb14309
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regenerate models
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2024-08-05 20:56:08 -07:00 |
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c06859a537
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first impl of dynamictable working!
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2024-08-05 20:51:52 -07:00 |
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e5d1cc52de
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regenerate models
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2024-08-05 18:41:53 -07:00 |
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da6d0d8608
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correctly handle attributes
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2024-08-05 18:41:38 -07:00 |
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652ddb3b48
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update hdmf common table
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2024-08-05 17:09:58 -07:00 |
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374bd8971d
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fix name array -> value in hdmf mixins
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2024-08-05 17:06:59 -07:00 |
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0a150d6bc2
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update models
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2024-08-05 16:06:05 -07:00 |
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b3b5b9d793
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unify naming of derived child groups, arrays, and values as just all being named "value". Add link building. Fix erroneously collapsing anonymous and named container groups.
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2024-08-05 16:05:44 -07:00 |
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e72c860edd
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update models with shorter names
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2024-08-05 14:19:03 -07:00 |
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9bfee3548e
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make names less lengthy by only contatenating one layer of nesting with __
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2024-08-05 14:09:50 -07:00 |
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b2d7b12a78
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update numpydantic version and relock
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2024-07-31 02:07:44 -07:00 |
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66369c7686
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no op to update github cache?
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2024-07-31 02:00:31 -07:00 |
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2fef717a62
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fix attr access in linkml provider result
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2024-07-31 01:58:31 -07:00 |
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0d10ba9d75
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regenerate models, lint
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2024-07-31 01:56:48 -07:00 |
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1d527d8f71
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fix hdmf forwardrefs, remove numpy types temporarily
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2024-07-31 01:54:14 -07:00 |
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776078ae67
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add pandas
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2024-07-31 01:30:06 -07:00 |
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38e8a6f7a0
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lint
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2024-07-31 01:27:45 -07:00 |
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abf1b0e6c0
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update hdmf models/schema
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2024-07-31 01:17:39 -07:00 |
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d118477d8a
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add dynamictable, vectordata, vectorindex mixins
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2024-07-31 01:13:31 -07:00 |
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723f53035d
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Merge pull request #4 from p2p-ld/linkml-arrays
Convert to linkml-arrays :)
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2024-07-29 19:19:48 -07:00 |
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