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dump-yaml

dynamictable

flat-hdf5-read

linkml-arrays

linting

main

numpydantic-dump

nwb-loader

pdm

perf-generator

roll-down

sqlmodel

tests

tests-generator

yaml-loader

#1

#10

#14

#16

#17

#17

#2

#3

#4

#6

#8

#9

models-v0.2.0

read-working

schema-v0.1.2

schema-v0.1.3

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• 3e5e73d186
  
  add formatting config sneakers-the-rat 2024-07-01 21:22:35 -0700
• 7a362e5988
  Merge pull request #2 from p2p-ld/pdm Jonny Saunders 2024-07-01 19:08:07 -0700
• 0150c3ca6e
  
  add codespell exceptions #2 pdm sneakers-the-rat 2024-07-01 19:07:12 -0700
• a0f0b06d66
  
  bump version sneakers-the-rat 2024-07-01 19:01:15 -0700
• 1eddf04400
  
  get tests running again sneakers-the-rat 2024-07-01 18:59:21 -0700
• 25536c053e
  
  docs dependencies sneakers-the-rat 2024-07-01 16:35:10 -0700
• 48b883a588
  
  no-op to poke readthedocs sneakers-the-rat 2024-07-01 16:22:55 -0700
• 9eb4f0dec6
  
  conversion from poetry to pdm sneakers-the-rat 2024-07-01 16:19:13 -0700
• d522dd84a5
  
  merge from origin sneakers-the-rat 2024-07-01 15:46:23 -0700
• 4296b27538
  
  catchup with prior work sneakers-the-rat 2024-07-01 15:44:26 -0700
• 661194e0a5
  Merge pull request #1 from yarikoptic/enh-codespell Jonny Saunders 2024-04-17 17:05:10 -0600
• 2e2ecf10c0 [DATALAD RUNCMD] Do interactive fixing of leftover ambigous typos #1 Yaroslav Halchenko 2024-04-17 16:00:34 -0400
• 63a405f4aa [DATALAD RUNCMD] run codespell throughout fixing typo automagically but ignoring the failure due to ambigous typos Yaroslav Halchenko 2024-04-17 15:59:53 -0400
• e315ccbf35 Skip folders with produced dumps from nwb schemas Yaroslav Halchenko 2024-04-17 15:59:48 -0400
• 190a5de0e3 Use _ for a variable which is not used Yaroslav Halchenko 2024-04-17 15:55:52 -0400
• 2564f90947 Add rudimentary codespell config Yaroslav Halchenko 2024-04-17 15:54:16 -0400
• 57b37a2d95 Add github action to codespell main on push and PRs Yaroslav Halchenko 2024-04-17 15:54:16 -0400
• 4ee97263ed
  Cleanup ndarray validator Jonny Saunders 2024-01-16 02:06:08 -0800
• 5adfa286cb fix doctests using correct tags adn quotes dev sneakers-the-rat 2023-11-20 16:05:21 -0800
• eac5ef4c80 more docs work move conftest to root so we find doctests? maybe we don't want to keep that tho sneakers-the-rat 2023-10-19 21:20:50 -0700
• 23a5412854 remove unused code sneakers-the-rat 2023-10-19 04:01:48 -0700
• e331b8756e minimal fix sneakers-the-rat 2023-10-19 03:08:38 -0700
• e4eb77fe06 ipywidgets sneakers-the-rat 2023-10-19 03:07:16 -0700
• c4fc342ff2 use poetry kernel and default kernel for rtd? sneakers-the-rat 2023-10-19 03:00:34 -0700
• 2276a7b501 docs, but need to sleep, come back in morning sneakers-the-rat 2023-10-19 02:52:15 -0700
• dd956b35c3 Still working on docs! sneakers-the-rat 2023-10-18 21:18:02 -0700
• a1d2924fd3 Some headers to outline next sections sneakers-the-rat 2023-10-18 01:15:23 -0700
• af5b947d12 a bunch of docs stuff sneakers-the-rat 2023-10-18 01:01:15 -0700
• 464d95d64d omfg another one. i'm done sneakers-the-rat 2023-10-12 00:19:40 -0700
• d2185ee1c3 for pydantic provider test by escaping additional bad chars in numpy field name sneakers-the-rat 2023-10-12 00:02:52 -0700
• 3101797b0d don't render jinja template as having a literal "keys" attr instead of item sneakers-the-rat 2023-10-11 23:28:22 -0700
• fee86135a3 omfg i hate this bug so much if this works i'll be so mad sneakers-the-rat 2023-10-11 22:38:46 -0700
• 92b1a6aac0 holy hell it was a TYPE COERCION in the way linkml handles annotations and a version mismatch between CI and local https://github.com/linkml/linkml-model/pull/162 sneakers-the-rat 2023-10-11 22:30:26 -0700
• 0d29ed279f hold up can this really be the bug sneakers-the-rat 2023-10-11 22:21:44 -0700
• 338369a540 trying to debug on CI by abusing warnings lol sneakers-the-rat 2023-10-11 22:07:01 -0700
• f54f5a8153 trying to debug on CI by abusing warnings lol sneakers-the-rat 2023-10-11 21:57:39 -0700
• 3164f92387 trying to debug on CI by abusing warnings lol sneakers-the-rat 2023-10-11 21:49:45 -0700
• 282acc063e trying to debug on CI by abusing warnings lol sneakers-the-rat 2023-10-11 21:38:29 -0700
• 3a426454c6 trying to debug on CI by abusing warnings lol sneakers-the-rat 2023-10-11 21:31:00 -0700
• 52754112aa make allow_repo an instance-level setting sneakers-the-rat 2023-10-11 20:55:03 -0700
• 38d83f3279 fix JsonObj bug https://github.com/linkml/linkml/issues/1665 sneakers-the-rat 2023-10-11 20:42:27 -0700
• d4493146b5 give language elements a schema annotation sneakers-the-rat 2023-10-11 20:09:22 -0700
• d9d62618bc Add source namespace to all generated linkml schemas change namespace annotation to is_namespace and use namespace for name of namespace dont change commit when commit is None - otherwise always reset to recent version when we don't intend to sneakers-the-rat 2023-10-11 20:03:08 -0700
• c6ca97e010 Correctly clone fixed versions in tests, adjusted fixed values to match, set default git clone temp dir from config variables sneakers-the-rat 2023-10-11 19:24:08 -0700
• c4d42cdacf remove split from schema adapter because it turned out to be a bad idea, we just use tree_root instead sneakers-the-rat 2023-10-11 18:32:31 -0700
• 615b006e4a updating nwb_schema_language to have proper single/multi fields for author/contact schema-v0.1.3 sneakers-the-rat 2023-10-10 01:08:25 -0700
• 825b5914db allow lists and singletons in generator sneakers-the-rat 2023-10-10 00:50:51 -0700
• 2d1fe3ad96 read is functional again, calling it a night. sneakers-the-rat 2023-10-10 00:12:33 -0700
• 729da40dfd install hdf5 sneakers-the-rat 2023-10-09 23:40:31 -0700
• 0508e3b620 re-enable truncate file test sneakers-the-rat 2023-10-09 23:30:39 -0700
• 91875dabb2 re-enable janky hdmf mapping test just to have it on the board for morale Fix serializing datasets sneakers-the-rat 2023-10-09 23:27:33 -0700
• f071705ac8 remove translate sneakers-the-rat 2023-10-09 23:15:46 -0700
• 42e64dce75 Refactor dataset adapter to use check/apply style maps! General cleaning around maps module, getting ready to remove translate module sneakers-the-rat 2023-10-09 23:06:24 -0700
• adaf939497 classes adapter sneakers-the-rat 2023-10-09 20:13:42 -0700
• 79397ec398 dict not list sneakers-the-rat 2023-10-09 19:05:08 -0700
• 2b530c4b33 don't require warning when at wrong git version sneakers-the-rat 2023-10-09 19:04:00 -0700
• a7b0f8880e fix tests, cant assign to tuple sneakers-the-rat 2023-10-09 18:59:53 -0700
• 6f32a5bfd3 super annoying you have to import all fixtures and dependencies manually sneakers-the-rat 2023-10-09 16:37:07 -0700
• edf7a4c445 [tests] - test adapter + results sneakers-the-rat 2023-10-09 16:33:02 -0700
• 0de6535c5a Schema language v0.1.2 - trivial rebuild to change date to datetime type and update linkml deps schema-v0.1.2 sneakers-the-rat 2023-10-09 15:10:29 -0700
• 39c600fda1 Regenerate nwb_schema_language models sneakers-the-rat 2023-10-09 15:06:53 -0700
• 6da6ef281f nevermind need to still fix model generation sneakers-the-rat 2023-10-05 22:15:33 -0700
• 06311b21bd [tests] cheap read test sneakers-the-rat 2023-10-05 22:12:27 -0700
• 8405ea948a [tests] ndarray proxy and serialization sneakers-the-rat 2023-10-05 22:05:10 -0700
• 0a9ca82476 [tests] nocover stuff that's just from the source module sneakers-the-rat 2023-10-05 21:42:29 -0700
• 033f6c434d [tests] nocover stuff that's just from the source module sneakers-the-rat 2023-10-05 21:39:15 -0700
• c215e69fd8 [tests] nocover stuff that's just from the source module sneakers-the-rat 2023-10-05 21:35:25 -0700
• a0d96014e1 [tests] pydantic generator sneakers-the-rat 2023-10-05 21:22:00 -0700
• 75f39b4914 huh coverage got disabled somehow sneakers-the-rat 2023-10-05 18:10:04 -0700
• 799d32ed24 remove hdf5_linkml - it doesn't make sense to be separate since it requires all the rest of the main package sneakers-the-rat 2023-10-05 18:04:14 -0700
• 808c63e7c2 skip provider test just to get coverage numbers sneakers-the-rat 2023-10-05 18:03:01 -0700
• d77dec5cc0 decrease deprecation warnings sneakers-the-rat 2023-10-04 22:54:20 -0700
• 24e0b704ff decrease deprecation warnings sneakers-the-rat 2023-10-04 22:49:23 -0700
• 15d1f0d7b1 clear repo imports before returning from sys.module sneakers-the-rat 2023-10-04 22:32:53 -0700
• 0f4f2dd683 also list linkml versions in the available versions for a pydantic provider sneakers-the-rat 2023-10-04 22:27:36 -0700
• d46e86c676 return None when the module actually doesn't exist sneakers-the-rat 2023-10-04 22:08:01 -0700
• 5438b2489b Fix relative imports in ectopic models -- Use a MetaPathFinder to allow python to resolve imports from the temporary model directory Build dependent versions in split builds Clear package imports when allow_repo=False sneakers-the-rat 2023-10-04 22:06:26 -0700
• 3b11afded6 fix truncate hdf5 file to not try and write while iterating sneakers-the-rat 2023-10-04 20:19:54 -0700
• ab63ea071c removing pandas sneakers-the-rat 2023-10-04 18:02:40 -0700
• 9947edfed2 Removing DataFrame type from imports, leaving as stub read-working flat-hdf5-read sneakers-the-rat 2023-10-04 17:59:10 -0700
• f682105c1a it working sneakers-the-rat 2023-10-02 23:26:43 -0700
• 34f8969fa9 Like 15 validation errors away from fully reading a file. sneakers-the-rat 2023-10-02 22:19:11 -0700
• eca7a5ec2e Correct schema for hdf5 path type dont double MRO for basemodels in generated dynamictable sneakers-the-rat 2023-09-28 17:58:45 -0700
• 6bbf56d1a0 Make all maps exclusive Track dependencies in build results and dont try and complete model if dependencies not alreay completed (ie. need multiple passes to complete, which is the correct behavior) Use base models in dynamic tables, we should fix the dynamictable base class rather than just having everything be an anonymous BaseModel in order to satisfy type validation Clear completed queue when advancing stages - we should make sure to move everything to completed with maps rather than implicitly keeping things in completed when they aren't - so we might be getting old versions of results that aren't actually fully completed but have some reference stubs still in them. sneakers-the-rat 2023-09-27 20:07:39 -0700
• 9fcc1458fb nearing the end - need to do final top-level packing but we're almost there! sneakers-the-rat 2023-09-27 01:19:10 -0700
• a2da236b2b Regenerate models sneakers-the-rat 2023-09-26 21:33:14 -0700
• 8a9b6903b6 Fix generation to use actual class in type annotation even when has identifier value, while also making dicts for container classes sneakers-the-rat 2023-09-26 21:30:53 -0700
• f672b931e5 Correctly handle container classes, use dicts instead of lists to be able to index by name. overriding __getitem__ and __getattr__ later sneakers-the-rat 2023-09-26 20:50:11 -0700
• d16b4757e1 Use dask instead of trying to make a dataframe compress arrays when serializing to json sneakers-the-rat 2023-09-26 19:50:49 -0700
• 50e816bad4 Working on finalizing the mapping operation... doing it single threaded for now and it's very slow but it completes up until the stage where we need to zip up the orphaned objects and other things that can be inferred from the model. sneakers-the-rat 2023-09-25 22:03:53 -0700
• ce75dacf93 autogenerating models for dynamictable sneakers-the-rat 2023-09-23 01:33:28 -0700
• 57fa3d34a2 pandas dataframe mimic sneakers-the-rat 2023-09-23 00:08:59 -0700
• aac0c7abdd need 2 stop for the night but its sort of happening sneakers-the-rat 2023-09-22 02:48:40 -0700
• 40984a6582 figuring out the strategy here... - added linkml_meta classvar to store additional linkml properties if needed - injecting path field to metaclass - sketch of doing a queue-based read - prune datasets & example allen institute data sneakers-the-rat 2023-09-22 00:31:34 -0700
• 321740f674 weird python relative import error from not having version naming sneakers-the-rat 2023-09-15 01:06:50 -0700
• 1f61dca46f weird python relative import error from not having version naming sneakers-the-rat 2023-09-15 01:03:40 -0700
• 94c204e8ea ok but really actually correct paths sneakers-the-rat 2023-09-15 00:53:07 -0700
• b283e8b0bf get correct path for provider sneakers-the-rat 2023-09-15 00:50:16 -0700
• ccf267babd regenerating models, some minor code cleanup and coverage omissions sneakers-the-rat 2023-09-15 00:37:20 -0700
• 3e2e6915cf Add ability to make JSON schema with numpy arrays! sneakers-the-rat 2023-09-14 23:43:00 -0700