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323 commits

Author SHA1 Message Date
f94a144d75
Merge pull request #10 from p2p-ld/nwb-loader
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NWB Loader
2024-09-11 21:24:37 -07:00
0eeea4c517
lint 2024-09-11 21:17:46 -07:00
95fbce1c4a
add id to index name on aligneddynamictable correctly 2024-09-11 21:16:37 -07:00
91b2abf07e
working thru tests for nwb file 2024-09-11 21:04:41 -07:00
bb59c9d465
remove unused code, nocover some debug arms 2024-09-11 19:30:04 -07:00
d31ac29294
clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references 2024-09-11 19:02:15 -07:00
1f1325e4aa
bump version of dependant nwb-models 2024-09-11 16:11:55 -07:00
b76b0fddf3
bump nwb-models version 2024-09-11 16:00:30 -07:00
3f360c2cc3
use in-repo version of models 2024-09-11 15:56:45 -07:00
dfcb395295
regenerate models 2024-09-11 15:50:09 -07:00
000ddde000
Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit) 2024-09-11 15:44:57 -07:00
27b5dddfdd
updating model generation methods, still some models being converted to str instead of being inlined, but almost there 2024-09-04 00:04:21 -07:00
8078492f90
CHECKPOINT WITH IT WORKING before cleanup and model regeneration 2024-09-03 17:48:36 -07:00
d1498a3733
checkpointing working on model loading. it's a sloggggggggg 2024-09-03 00:54:56 -07:00
cd3d7ca78e
model update 2024-09-03 00:54:38 -07:00
676d42d4f5
instantiate ValidationError according to https://github.com/pydantic/pydantic/issues/6734 2024-09-02 19:00:15 -07:00
ee35e5921b
exclude metadata vars from column and category checks 2024-09-02 18:50:48 -07:00
97135c14f2
update models to correctly handle ElementIdentifiers 2024-09-02 18:46:02 -07:00
a6934276d2
codespell 2024-09-02 13:41:41 -07:00
53c415d947
lint 2024-09-02 13:41:04 -07:00
3641d33cc8
split up fixtures and nwb fixture in particular, add --clean pytest option 2024-09-02 13:40:46 -07:00
49585e467a
working on grpah loading of nwb files 2024-08-31 01:47:42 -07:00
b555ccb199
testing nwb file, and experimenting with yaml format 2024-08-30 00:39:10 -07:00
0e4058520a
Merge pull request #9 from p2p-ld/perf-generator
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[perf] Parallel builds
2024-08-27 21:08:13 -07:00
a60499080c
simplify gitattributes 2024-08-27 21:04:56 -07:00
79a7beb1c6
gitattributes to exclude from diffs 2024-08-27 21:01:22 -07:00
bb900774d8
gitattributes to exclude from diffs 2024-08-27 21:00:10 -07:00
81b475a2d4
regenerate models with sorted imports 2024-08-27 20:50:23 -07:00
fac18ab147
copy and overwrite rather than shutil.move in generate 2024-08-27 20:49:53 -07:00
798b92de6b
name change in imports from schema -> is_schema 2024-08-20 23:21:40 -07:00
fc8cca0e16
correct cache invalidation 2024-08-20 23:17:44 -07:00
cc334ae195
lint 2024-08-20 23:12:01 -07:00
fe7e9f89ca
regenerate models 2024-08-20 23:04:05 -07:00
582ac5f09c
parallel builds, remove monkeypatches 2024-08-20 22:45:24 -07:00
98a9975406
Merge pull request #8 from p2p-ld/separate-nwb-models
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Separate models into `nwb_models` package
2024-08-20 20:42:24 -07:00
0c51f00596
aha fix black formatting include, generate core by cloning into tmp directory 2024-08-20 20:26:00 -07:00
d03e4107a4
install models, editable install 2024-08-20 20:07:41 -07:00
647bdae442
add diff 2024-08-20 20:05:48 -07:00
c48a7f1126
oop not a module 2024-08-20 20:00:38 -07:00
0571669f7d
add caching 2024-08-20 20:00:07 -07:00
b9574a424b
CI action to check for changed schema 2024-08-20 19:57:35 -07:00
bb3512723f
oh right moved schemas too 2024-08-15 23:38:09 -07:00
8375fe1e11
lint and lock 2024-08-15 23:34:14 -07:00
a7a935d508
initial refactor 2024-08-15 23:31:40 -07:00
ff77f0a2b8
Merge pull request #6 from p2p-ld/dynamictable
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Implement Dynamictable
2024-08-15 01:57:39 -07:00
ec7a8254fe
fix tsrv test 2024-08-15 01:55:15 -07:00
3cda6c3e7c
lint 2024-08-15 01:48:34 -07:00
f5a4173494
update models 2024-08-15 01:47:55 -07:00
24494b8ee4
reference vector series tests, fix model tests 2024-08-15 01:43:42 -07:00
10965743eb
regenerate models 2024-08-15 01:01:47 -07:00